BAC Information

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BAC

Clone NameMSMg01-171E14
Chromosome18 (Build37)
Map Location 38,413,416 - 38,413,533
singlet/doubletsinglet
Overlap gene0610009O20Rik
Upstream genePcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik
Downstream genePcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171E14.T7 (MSMg01no171_e14.b1)MSMg01-171E14.TJ (MSMg01no171_e14.g1)
ACCAG367579AG367580
length733975
length of high quality
(start - end)
118 (125 - 242)---
definitionCHROMAT_FILE: MSMg01no171_e14.b1 PHD_FILE: MSMg01no171_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:28 2005CHROMAT_FILE: MSMg01no171_e14.g1 PHD_FILE: MSMg01no171_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATGATTTATGCTCAGGACAGGACGACAGCATAAATACAGCTCCC
TGTCGAGGAAGGCCGGCCTACCTGGAAAAGGACAAGAGGAAGGAAAGTGT
CTTAGGAGTTTCACAATTCTTCTTCTGGCCTCCCAGATCTCAGAGGGACT
GACTGGAAAGTGCCCCCTGCTCCCTCAGAACGATCCCTTTCTCAGGTGAC
TTCTTGCTGACTCTCTCCAGCACTTCGGAGGCATGTTCTTCCCAGGGCTG
ACTGGCCAGCTCCCAGTATTTTTGGCCTCAGGGAACCAAGGCAGGGCCAG
GAAAATAACTGGCTTCCAGNTCCAGTGCCTTCCCTCAGATAGTTCCCTGA
GATCTGGACCCCCCCAAAAAAAAAGAAAAAAGTACTAGGTTACCTAGTAT
CTTCAGGGGGCAGTTTCTGTTAGATGGACCCCTGTTGCTCTCTACGCCCA
GGTAACCAGTTGTCATGCCTTTGACTCCTCTTGCTTAACGTTTTGTATTT
AAGTACCCGGATATAAATTGTTTTTACTGTGATAGTCATGCCAGATGTCA
TACCCTTCTCTTTGTTTTGTTAGCGTTCCTTTTTCTTGTTTCGTCTATCT
CCTTTTTTTTCTTTCCCCCCCCTTTTTTCCTCCTTTTTCTTTCTCTCTTT
TTCTTCTCCCTTATCCCCCCTTTTTTCTTTTTT
TCGAATTGACTAGTGGGNNTAGGCCTGGGCNNGGCCGCCTGGNGCCTGTC
GCACACTTTACGGTGGAACACTAATAGNAANAGGATCCGCGNNNGAATTC
CACGGTACGAGCCACAGGCCTCACNTGCATGAACTCTGGGTCTGCAAGCA
AAAGAATACAATAGCCAATGTGTAGAAACATGCAACTTGTACACTGGGCG
AAGCATGGAATAGGCCAGAACTCATGAACTAAAACGTATGGTCCTTAATA
TATAGCATGGCAAGCGCACCATCGTCAAGATGAGTCGGGAGAAGGTAAAC
CGCTACGAACACCGAAGTCGGACATACTGTGATGCAGTCACTGTACTTCC
TTGAAGAATGAAGAGGCTTCCGCACATGGCACATGGAGACTCTATATATT
TGTGATACGCACGTATTATATTTTGTTATATAGAAACACTAGGAGATGTA
AGCCAAGACAGAATATTAATATGTTTATTTAGCCCCCAATTCTTTAGCCC
CTTTGAATGTGTGTAGTATTACAGAATCAAGCTTGTTTCCCCCCCCACCC
AGAAAAAAATAAAGCATTGATGATGGTGTGTTAGGAGCATTCAGTGATCA
ACCTCGCACCTTTTTCATATATTTACTTTATTCCATAATTGTTGCATTAC
TAGGCCCTGCTGCTATTAAAAAATAAATTGTAATTATGTATAATTTGTTT
TTATTTATATTAACCATAGAACCTCCACCCACCCCCCCCTCTTTTTTTTT
ATTTTCTGTCTCTTGTCTCTTCCTCCCGCCCTATTGTATATATTTAATAA
AATACTTATTTTATTTTATTTTTCCCACCACCCCCCCCACCCCCGCCCTA
ACTGTTATATATTTTATTATTATATATATATTTTTATATTTTTCATTTTA
GATGTAACCATACACATAATTTTTCATTATAACCAACTCTCAATATTTTT
TCTTATCTATCTTCTCCCACGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_e14.b1 MSMg01no171_e14.b1 CHROMAT_FILE:
MSMg01no171_e14.b1 PHD_FILE: MSMg01no171_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:28 2005
         (118 letters)



>mm_chr18_38413216_38413733
          Length = 518

 Score =  228 bits (118), Expect = 7e-65
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaaggacaagaggaaggaaagtgtcttaggagtttcacaattcttcttctggcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaggacaagaggaaggaaagtgtcttaggagtttcacaattcttcttctggcctccc 260

                                                                     
Query: 61  agatctcagagggactgactggaaagtgccccctgctccctcagaacgatccctttct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatctcagagggactgactggaaagtgccccctgctccctcagaacgatccctttct 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)