Query= MSMg01no171_i11.b1 MSMg01no171_i11.b1 CHROMAT_FILE:
MSMg01no171_i11.b1 PHD_FILE: MSMg01no171_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:46 2005
(313 letters)
>mm_chr18_12540004_12540716
Length = 713
Score = 584 bits (302), Expect = e-171
Identities = 308/310 (99%)
Strand = Plus / Plus
Query: 4 ggaattctctcagtcctacaaagagacattaaagtgataaagtggtctccttggtgactt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcagtcctacaaagagacattaaagtgataaagtggtctccttggtgactt 263
Query: 64 accagaaggtcctggctcacctacagttaggactctggcatttggttcccttgtaggaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accagaaggtcctggctcacctacagttaggactctggcatttggttcccttgtaggaca 323
Query: 124 aaaccattgtgaagtcagaatggtttttctgctcaggaaaggtaaaagctagggtgtgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaccattgtgaagtcagaatggtttttctgctcaggaaaggtaaaagctagggtgtgga 383
Query: 184 tgctcacagggaaacctgcagtccagggtgtggcaccaggaaggaaggcccctggctgct 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 tgctcacagggaaacctgcagtccagggtgtggcaccaggaaggaagacccctggctgct 443
Query: 244 gagtcagcccatgccttgcagctcttacaaggctgtgcagcaagtgtctaggatctcagt 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 gagtcagcccatgccttgcagctcttacaaggctgggcagcaagtgtctaggatctcagt 503
Query: 304 tcatgcagag 313
||||||||||
Sbjct: 504 tcatgcagag 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_i11.g1 MSMg01no171_i11.g1 CHROMAT_FILE:
MSMg01no171_i11.g1 PHD_FILE: MSMg01no171_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:46 2005
(279 letters)
>mm_chr18_12722165_12722841
Length = 677
Score = 468 bits (242), Expect = e-136
Identities = 270/280 (96%), Gaps = 4/280 (1%)
Strand = Plus / Minus
Query: 1 cttctaaacagtgcagaattcagtattctctgttactaatcgctgcgcagctgaggaata 60
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 477 cttctaaacagtgcagaattcagtat--tctgttactaatcgctgtgcagctgaggaata 420
Query: 61 cagcc-ggatgaggagcacatggtcaatgttaactggcactggagtgagctggagcagca 119
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 cagccagg-tgaggagcacatggtcagggttaactggcactggagtgagctggagcagca 361
Query: 120 tgctctgcttggtcaaagccgagtgctactggagactgaatcacggtcacacactgttgg 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 tgctctgcttggtcaaagccgagtgctactggagactgaatcagggtcacacactgttgg 301
Query: 180 caagcgctcaatgccgaactctccctgcagcccagcagctcactcacagctccactgtcc 239
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 300 caagcgctcaatgccgagctctccctgcagcccagcagctcactcccagctccactgtcc 241
Query: 240 accttctacctgtattgtgatctcagatatgggaaggtca 279
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 accttctacctgtattgtgatctcagatatgggaaggtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 677
Length adjustment: 9
Effective length of query: 270
Effective length of database: 668
Effective search space: 180360
Effective search space used: 180360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
