BAC Information

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BAC

Clone NameMSMg01-172A16
Chromosome18 (Build37)
Map Location 50,966,031 - 50,966,342
singlet/doubletsinglet
Overlap genenone
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneLOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172A16.T7 (MSMg01no172_a16.b1)MSMg01-172A16.TJ (MSMg01no172_a16.g1)
ACCAG368081AG368082
length726729
length of high quality
(start - end)
316 (42 - 357)293 (432 - 724)
definitionCHROMAT_FILE: MSMg01no172_a16.b1 PHD_FILE: MSMg01no172_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:24 2005CHROMAT_FILE: MSMg01no172_a16.g1 PHD_FILE: MSMg01no172_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTGTTTTCTCTGTCAATCAGATACATTCCATCTCCAATTAATAGCTGT
GGTGCTTACTTCTCTAAGCATGTACTGTTTAAGGTCTCTGTAACATACAT
GAAAATGTCTTCAATTCCCAAATTAAAATTCTTATCATGAAATAGATCCT
TAATTTTATCCAATGCATCTAAAGAAATATCATTCTTCTCATTAGTTTTC
TGTTAACAAGCTAAAGTTCATTAATATTTAAATGTTAAGTAACTCTTCTG
GTTATAGAACACAGCCTCTATTGTCTGATATTAAAAATATATTTTTTCTT
TGTTTGTTTTTTATTTCNTTACTTTCCATGTTTTTATGTATGCCCATTTT
AATTGATATTTTATTGGTTTACTTTAACACAACCAAGAAATCTCACTCCT
TTAATAGGACTATACTTTTTTCTTTTATTAAAGTAGTTTTCTTTATACAA
TATATTCTGATTACTGTCTTTCCTCCCTCTACTCCTTGCAGTTCCTCCCT
ACCATTCCCTTCCATCCTAAGCCACTCCCTTTCTGTCTCCTGTTTGAAAC
AAACAGGCACCTAAGGGATAATAATAAAATAAAATAAAATACAATATAAT
AACATAAACAAAACCTAACACATTAGAATAGGATAAAACTAACATAAGGA
AGAACGACTAAGAAAAGGCATAATAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTACCTGAGGAATCCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCCCCCTTAATCATCAGGGAAGTGCAAATCAAA
ACAATCCTGAGATTCCACCTCACACCAGTTAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGCTGCTGGCGAGCATGTGGAGAGAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTTTACAACCACTCTGGAAATCAGTC
TGGCAGTTCCTCAGAAAATTGGACATAGTAATACCGGAAGATCCAGCAAT
ACCTCTTCGTGGATCACTTNCCGAAGCACGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGCTCATAGAAAAATAATTTATAATAGCCGGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAGTGGATATAGAAAAATGTAT
ATTTACACAATGGAGTACTACTCAGCTATCAAAAAGAATGAATTGTTGAA
ATCCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAACTCACATGATATGTACTCATTGATAAGTGGATAT
TAGGCCAGAAACTTAGAATACCCAAGACATAAGATATAATTTGCAAAACA
CATGAAACTCAAGAAGAATGAAGACCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_a16.b1 MSMg01no172_a16.b1 CHROMAT_FILE:
MSMg01no172_a16.b1 PHD_FILE: MSMg01no172_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:24 2005
         (316 letters)



>mm_chr18_50965828_50966543
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgttttctctgtcaatcagatacattccatctccaattaatagctgtggtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattctgtgttttctctgtcaatcagatacattccatctccaattaatagctgtggtg 456

                                                                       
Query: 64  cttacttctctaagcatgtactgtttaaggtctctgtaacatacatgaaaatgtcttcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cttacttctctaagcatgtactgtttaaggtctctgtaacatacatgaaaatgtcttcaa 396

                                                                       
Query: 124 ttcccaaattaaaattcttatcatgaaatagatccttaattttatccaatgcatctaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 395 ttcccaaattaaaattcttatcatgaaatagatccttaattttatacaatgcatctaaag 336

                                                                       
Query: 184 aaatatcattcttctcattagttttctgttaacaagctaaagttcattaatatttaaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaatatcattcttctcattagttttctgttaacaagctaaagttcattaatatttaaatg 276

                                                                       
Query: 244 ttaagtaactcttctggttatagaacacagcctctattgtctgatattaaaaatatattt 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 275 ttaagtaactcttctggttatagaacacagcctctattggctgatattaaaaatatattt 216

                       
Query: 304 tttctttgtttg 315
           ||||||||||||
Sbjct: 215 tttctttgtttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)