BAC Information

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BAC

Clone NameMSMg01-172G09
Chromosome18 (Build37)
Map Location 82,573,886 - 82,574,117
singlet/doubletsinglet
Overlap geneGalr1
Upstream geneLOC100039458, LOC100040871, B020010K11Rik
Downstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G09.T7 (MSMg01no172_g09.b1)MSMg01-172G09.TJ (MSMg01no172_g09.g1)
ACCAG368322AG368323
length792704
length of high quality
(start - end)
195 (43 - 237)232 (86 - 317)
definitionCHROMAT_FILE: MSMg01no172_g09.b1 PHD_FILE: MSMg01no172_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005CHROMAT_FILE: MSMg01no172_g09.g1 PHD_FILE: MSMg01no172_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGGCTACTGTGAGCCTGCCTGGACCCAGAGAAAGTGCCTACCTCAT
CATGCTGGTTAGATTTTTGTCAAATTGACATTAGCTTCAGAGACCTGCGA
AGAAGAAACCTCAATTGGGAGATGGCCTCCATCAGATCGGCTTTGTGAAT
GTGTCTATGGAATATTTTCTTGATTGATGATGATGTAAAAGGGCCCAGTC
CACAGAGGGTGGGACCATCTCTGGTCAAGCGCCCCCACACATAACACCAA
TTCCGGATGGCAACACTTTTTTTCTAATCCCCGGGCAATTCTTATATTCT
TACCCCGGGCCCCCCCCCCCCTTTTAACTGATTTTTTTTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTTATATCACCCCTCTCCTTTTGTGTGTGATT
TTTTTTTCTCCCATTCTTCCCTTTCTTTCTTTCACCCCCCCCCCACTCCA
AAAAAAAAAAAAAAAAACCACTCTTTCCCCCCTCTCTGCCCCCGCTTATT
TCCCCCCTCTCTCCTTTCCCCCCTAACCCTCATTCTTTATAGACCATCTC
TTTCTTCTCCCCTTATCTCCCTTCTACCTTCCCTCCCCTTTATTATTATA
TAATACATCCCCCCCCCCCCCCCTCCTTTTCCCTATCCCCCCTTCCCCCC
TTCTTTCTCCCCCCTCGTTCTTCTTTTCTCCCCCCCCCCTCTTCCTTCTT
CCTCTTCCTTCTCTCTTTCCTCCTCTTTTCTTTCCATCTTTT
CTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGGCGAGCAAGAACACACAG
CTGGGGGAGCTGAGTGTTTATCCCGCCTCCCTGTATTGGGAAGGACTGGT
GGCTCACAAGCTCCTAAGAATTACACAACACTGTGCATTTATGTTAACCA
AATCCCGTAAACTTCTTAGGTGCTATTTGTTGATGGTTTGTGAATCCAGA
GTGTATTGTTGGTGGCCACTTGATGTGGTTCTTGGGGTAACCTCTGTCAT
AATATTTCCTTCCAGGGTACTATTTATTGTAAATTCTGAGGTTTTCATGT
AACTTTATCTTTTATTTCCCAAACAGCCCGCCAGCAATACCATATACTAC
CCCCCCCCATGTATAAAAACAAAAAAAAATTATATTTTATTCATAAGGTA
CCCATTTAAAGAAGGCCATCTTCCCACCTTTGCACGATATGATTGTGACT
CCTTACAATGCCCATATTGCTTCATTGATTGTCACTGGATCAAATTTGCT
TATTACCGCCTTGCTGCCTGTAAGTGTCCGATTTCACCTTTTGGTCCCCG
TAACTGCAACTCAAATTCTGTTTTGCTCCTGGAGTTTTGCGGAGAGCCCT
ATTATCCTCGAATGTGCCTTTTATACCTTCTTTTTTTTACCTGTTATTCC
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g09.g1 MSMg01no172_g09.g1 CHROMAT_FILE:
MSMg01no172_g09.g1 PHD_FILE: MSMg01no172_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:52 2005
         (232 letters)



>mm_chr18_82573686_82574317
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaagaacacacagctgggggagctgagtgtttatcccgcctccctgtattgggaagga 60
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 432 agcaagaacacacagctgggggagctgagtgtttatcctgtctccctgtattgggaagga 373

                                                                       
Query: 61  ctggtggctcacaagctcctaagaattacacaacactgtgcatttatgttaaccaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 372 ctggtggctcacaagctcctaagaattacacaacactgtgcatttatgttaaccaaaccc 313

                                                                       
Query: 121 cgtaaacttcttaggtgctatttgttgatggtttgtgaatccagagtgtattgttggtgg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 312 cgtaaacttcttaggtgctatttgttgatggtttatgaatccagagtgtattgttggtgg 253

                                                               
Query: 181 ccacttgatgtggttcttggggtaacctctgtcataatatttccttccaggg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccacttgatgtggttcttggggtaacctctgtcataatatttccttccaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)