BAC Information

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BAC

Clone NameMSMg01-172J15
Chromosome18 (Build37)
Map Location 67,951,785 - 67,952,069
singlet/doubletsinglet
Overlap geneSeh1l
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2
Downstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172J15.T7 (MSMg01no172_j15.b1)MSMg01-172J15.TJ (MSMg01no172_j15.g1)
ACCAG368461AG368462
length831758
length of high quality
(start - end)
177 (42 - 218)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no172_j15.b1 PHD_FILE: MSMg01no172_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:06 2005CHROMAT_FILE: MSMg01no172_j15.g1 PHD_FILE: MSMg01no172_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAAGAAACATTTATTTTTACTTATGTGTATGTGCATGTGTTTGTGATTAT
GGGTCTCTGAGTAAGCCACCAAAGTGTCAGAGTCCCTAGAGCTGGAGTTA
CAAGCTGTGCACCACTGGATATGGGTGCTAGGATCTGAGCTCAAGTCCTC
TGTAAAGGCAAAGTGTTCTCAGCCACTAACCTATCTCTCCAGCCCAGATT
TATTCTTTTTTTTTTCTTAACGATTCATTTATTTTCTTTCTTTCCATGAC
GACCCTGATAAAAATTTTTTTTTTTTTAAGCCCAAATAATAAATTTAGTA
ATTTTTTGAGGTGCCCCCAAGAACAAAATCCCTTGTTTTTTTTTTTTTTT
TTTGTGTTTTTTTNGCCCCCCCCCAAAAATTCATTTAAAAACCCCCGGGG
GGGGGGGGTGTTTCCCCCTCTTCTTCTTTCTTCTCTTATTTTTCCCTTTT
TCTCTCCCTTTTATACCCCCCCTTCCCTTTTCTTTATTTTTCCTATCTTC
CCTCCTCTCTCCTTTTTTCCTGTCTCCTTTTTCTTTCCTCATTCCTTTTT
TTATTTCTTCTCCCCCCTCCCTTTCTTTTTTTCCTCTTCTCACTTTTATC
GCCTGTCACCGTTTCTAGCTTTATTCTCTCATTATTTATTCCACATACCT
TCGGTATACCTCTTTTGCCCATTTTCTTTTTTTTTTTTTATTCCCCCCCT
CGTCTTCCTCTCTTTCCTCGCTACTTCCTCTCTTATTTTTTTTTTCCCCA
CCTTATTTACCGGTTCCCCCTCGCTCTTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAATATAATTCAATGGACTTAAAAAACTGT
CCATACTATAACCAAGGACGCCACTAAATACAGACAAGAGTGAAATTCCA
AGAGTAAGTGTCACAATTATTGGTGAATTACTTTATTCCATCTTAAAATT
CACCTTTTAGTATGACTACCAGGAGAGGTGGCTCAGCAATTAAGGGCCCT
GGCTGCTCTTGCAAAGGACCCAGGTTTGATTCTGAGCACCCACATGGTGG
CTCACATGAATCCGTATTTCTTTTTCCAAAACACTTGACTCTTTGGCCTC
CCCTTATATTGCTCACATTNACGAGCCCCGATATACTAGTAGGTAAAACA
CCCTACACTTACCACGCAGAAAAGAAAAAAGGTAAGGAGGGTGCGGGCCT
TTCCCTCACACTATCCTCCCCTGCTATCATTAACTACCTTTCTTTGCTCC
TTTCACCCTTTTCCTCACTTTCCTTTTACCGCCCTTCTCCCCTTTTCCCG
CCGCTTGACTTCCTTTCCCTCCTTCCTTTACCCGCCTTTTACCTTTTTTT
TTTTTTCTCTTCTTCCCTTTTTTTTTTTTCCCTATTACCCTTTTTCCCCT
TATTCCTTCCTTTTTTTTCCCTCTTTTTTTCTCTTTTTCCCCTTTTTCTC
TTCCCCCTCTTCCTTTTTCCCTTTTTCCCCGCCCTCCTTTCCACTTCTTT
CTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_j15.g1 MSMg01no172_j15.g1 CHROMAT_FILE:
MSMg01no172_j15.g1 PHD_FILE: MSMg01no172_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:06 2005
         (289 letters)



>mm_chr18_67951717_67952405
          Length = 689

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatataattcaatggacttaaaaaactgtccatactataaccaaggacgccactaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 353 cagaatataattcaatggacttaaaaaactgtccatactataaccaaggaagccactaaa 294

                                                                       
Query: 61  tacagacaagagtgaaattccaagagtaagtgtcacaattattggtgaattactttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tacagacaagagtgaaattccaagagtaagtgtcacaattattggtgaattactttattc 234

                                                                       
Query: 121 catcttaaaattcaccttttagtatgactaccaggagaggtggctcagcaattaagggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 catcttaaaattcaccttttagtatgactaccaggagaggtggctcagcaattaagggcc 174

                                                                       
Query: 181 ctggctgctcttgcaaaggacccaggtttgattctgagcacccacatggtggctcacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctggctgctcttgcaaaggacccaggtttgattctgagcacccacatggtggctcacatg 114

                                                        
Query: 241 aatccgtatttctttttccaaaacacttgactctttggcctcccc 285
           ||||||||  ||   ||||||||||||||||||||||||||||||
Sbjct: 113 aatccgtaactccacttccaaaacacttgactctttggcctcccc 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)