Query= MSMg01no173_b21.b1 MSMg01no173_b21.b1 CHROMAT_FILE:
MSMg01no173_b21.b1 PHD_FILE: MSMg01no173_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:43 2005
(321 letters)
>mm_chr18_86949336_86950056
Length = 721
Score = 582 bits (301), Expect = e-171
Identities = 313/317 (98%)
Strand = Plus / Minus
Query: 5 gaattctctgattcctacaattaaatttctggtatctgctagtaagtgactgaattaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctctgattcctacaattaaatttctggtatctgctagtaagtgactgaattaaag 462
Query: 65 tagaaactgaggctgtgcgtaaatactgatacactgaagtgttttgcagttggctaaacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 461 tagaaactgaggctgtgcgtaaatactgatacactgaagtgttttgcagttggttaaacc 402
Query: 125 attttatttgtagactaacagatggaggttcagataagatggatcatgaatcattggctc 184
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 401 attttatttgtagactaacagatggaggttcagataagatggatcatggatcattgactc 342
Query: 185 ccaataccatgataacaaagtggatattattatgagagctgcagagggctggctatatgg 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccaataccatgacaacaaagtggatattattatgagagctgcagagggctggctatatgg 282
Query: 245 tagacattgggaccacactagtagttaagtattcaatcctgcatcttctactcctgcatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tagacattgggaccacactagtagttaagtattcaatcctgcatcttctactcctgcatc 222
Query: 305 ttctagatcgtttcttc 321
|||||||||||||||||
Sbjct: 221 ttctagatcgtttcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_b21.g1 MSMg01no173_b21.g1 CHROMAT_FILE:
MSMg01no173_b21.g1 PHD_FILE: MSMg01no173_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:43 2005
(637 letters)
>mm_chr18_86797053_86798088
Length = 1036
Score = 1162 bits (601), Expect = 0.0
Identities = 628/639 (98%), Gaps = 5/639 (0%)
Strand = Plus / Plus
Query: 1 ttctgggggctgtttctgaaaagcaagttgaaagtattaagagatgatggccc--aggcc 58
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttctgggggctgtttctgaaaagcaagttgaaagtattaagagatgatgg---ggaggcc 257
Query: 59 cacaattcccaagagcatgggggctaggggtttatataaaacacagtttcagagagaaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacaattcccaagagcatgggggctaggggtttatataaaacacagtttcagagagaaaa 317
Query: 119 agagaagtattagaacagctgtgttaagtaaagactgaggattgagctggtgttcgccat 178
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 318 agagaagtattagaacacctgtgttaagtaaagactgaggattgagctcgtgttcgccat 377
Query: 179 caggtgaacccagagattatcagaagggaatcttagttatgcagaagtgcttgttgcttg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caggtgaacccagagattatcagaagggaatcttagttatgcagaagtgcttgttgcttg 437
Query: 239 ttgcttgttgagttcctcacagagttcatattaggacacacagagttcaatgtcccatgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgcttgttgagttcctcacagagttcatattaggacacacagagttcaatgtcccatgc 497
Query: 299 taaggatgaccccactcttccttaacttttgtatctcctgagcactttgcttaaagagtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaggatgaccccactcttccttaacttttgtatctcctgagcactttgcttaaagagtg 557
Query: 359 actagaaacatcatatgaagagtgacttctggtaatcatcttccgctgtggcaggccctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actagaaacatcatatgaagagtgacttctggtaatcatcttccgctgtggcaggccctc 617
Query: 419 aaggtcccataagccactgagtatttgtttctacaaattctacatgcatgaacagctttc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaggtcccataagccactgagtatttgtttctacaaattctacatgcatgaacagctttc 677
Query: 479 cagcaccaggaaacatggtagggaccagacaatcatgaattattcccatgtgacattaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagcaccaggaaacatggtagggaccagacaatcatgaattattcccatgtgacattaaa 737
Query: 539 taggtcattttgaaaaaaaatcgaaaaaggtagctttggattgttaaaaacacatattca 598
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 738 taggtcattgtgaaaaaaaatcgaaaaaggtagctttggattgttaaaattacatattca 797
Query: 599 acaaaaaaggaaaaaagatatttggattagggttgtcaa 637
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 798 acaaaaaaggaaaaaagaaatttggattagggttgtcaa 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
