BAC Information

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BAC

Clone NameMSMg01-173D18
Chromosome18 (Build37)
Map Location 68,009,713 - 68,010,022
singlet/doubletsinglet
Overlap genenone
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
Downstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173D18.T7 (MSMg01no173_d18.b1)MSMg01-173D18.TJ (MSMg01no173_d18.g1)
ACCAG368901AG368902
length738745
length of high quality
(start - end)
328 (46 - 373)329 (385 - 713)
definitionCHROMAT_FILE: MSMg01no173_d18.b1 PHD_FILE: MSMg01no173_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:52 2005CHROMAT_FILE: MSMg01no173_d18.g1 PHD_FILE: MSMg01no173_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGTAATATATTGCTTTTCTCACTCAGTTATTTCTTCATACTT
AGGTAGAAACAGAAAAGAAAGGTGTTCTGGATTTTGGTGACTTGACCTAT
GCAGGCTGGAAAGCTCTCCCACTCAAGCTAATAAATAGGACACATGCTAC
CGTGCCAATCAGATTGATTATTAATGCTGTAAGTACTAACCTCGAGTTAG
AGACTACCTACAGAGTATATTGATTTGAAATTATAGGCAGTGCTAATATT
CTTGGTTAAATTTTCCTTGTAAAAGTAAATTATACTGCTGAGAGCCTGGT
AATACCTGTTTTGTTCTGCCCCCCCCCACACTGACTTTGTGTCCTGAACA
GAATGCCGTAGCCTGGCGCTGTTTCACGTTTTCCAAAGAGCCCATCCATG
CGTCTCTGAAAGCTGCTCCGTATGCTGACGTTACTGCTCAGCTAGCAGCC
CCGTCCGTAGTCAGTCATGTGATGCCTGCCAGTTACGACGGAAAGGTAAG
TTGAATCAGTTTAAAGACAAAACTGGCTTAGGAGTGAAGAACAAGTTTTA
AACTACTTTTAGCTCATTGGGATTTCAGTCTTAATATACACTAAAATTTT
GTTTTTCATTTTATAGGACCCAGAATTTCTGGTAGTTTGGGTTATTTTCC
ATAGCCCAAAGAAACTCCTCACTTCAGGTAGCATACTT
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAAGGATTACAGATAGGTTC
AGAAACTCAAAGGAGGCATGAATGTACTCCAAGAACACAAAAACGAACAG
CCGAATGAAATAAAGACATCAATTCAAAATATGAAAATAGAACTCAGTAA
AGGGAGAGAACTGCTAAATCAAAGCCAAAGGAAATGACGATGGAAACATG
GACCTCCATCAGCCAAATACCACTCAGCGGACAGCCTTGCCAACAGGACT
AACTGATCACGTGGCGAACATCGCATCAGGGTTTGAAGGCAACGTGAGAG
AATTAGGTCTTTAGTTCTTGGCCCATGCTGCCCTTTTACATGTATACATG
AACAGAATATGAGAGGGTTTGGGGACACCATGAAACCATCAATCTATGGA
TTATGAACATACATGGAGAAGGCTTCCATTCCAAAAGTATAGAAACTGCT
TTCAATAAAGCCAAAGAAAAAAATTTCCCGATCTAAAGAAAAAGACGTCC
ACCTGGGAACAATAAACATACAGAATATCAATTTTTAAAAAGATCAGAAA
AAGAAACTCCCCAAGCCATAGTATAATTAAGCCACCAAAACCGAGACTAA
ACAAAGGTTACTGAAAGCCACAGGAGAGAGGGGCAAAGTTACACAGAAAG
GCAGAGGAGTCCAACCTACAGCTGATGACGCAGGCCTAGAAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_d18.b1 MSMg01no173_d18.b1 CHROMAT_FILE:
MSMg01no173_d18.b1 PHD_FILE: MSMg01no173_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:52 2005
         (328 letters)



>mm_chr18_68009509_68010236
          Length = 728

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagtaatatattgcttttctcactcagttatttcttcatacttaggtagaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagtaatatattgcttttctcactcagttatttcttcatacttaggtagaaa 264

                                                                       
Query: 65  cagaaaagaaaggtgttctggattttggtgacttgacctatgcaggctggaaagctctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaaaagaaaggtgttctggattttggtgacttgacctatgcaggctggaaagctctcc 324

                                                                       
Query: 125 cactcaagctaataaataggacacatgctaccgtgccaatcagattgattattaatgctg 184
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 cactcaagttaataaataggacacatgctactgtgccaatcagattgattattaatgctg 384

                                                                       
Query: 185 taagtactaacctcgagttagagactacctacagagtatattgatttgaaattataggca 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagtactaacctcgagttagggactacctacagagtatattgatttgaaattataggca 444

                                                                       
Query: 245 gtgctaatattcttggttaaattttccttgtaaaagtaaattatactgctgagagcctgg 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgctaatattcttggttaatttttccttgtaaaagtaaattatactgctgagagcctgg 504

                     
Query: 305 taatacctgt 314
           | | ||||||
Sbjct: 505 tcacacctgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)