BAC Information

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BAC

Clone NameMSMg01-174O08
Chromosome18 (Build37)
Map Location 75,017,906 - 75,018,188
singlet/doubletsinglet
Overlap genenone
Upstream geneMro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2
Downstream geneLOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672, Zbtb7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174O08.T7 (MSMg01no174_o08.b1)MSMg01-174O08.TJ (MSMg01no174_o08.g1)
ACCAG370057AG370058
length911823
length of high quality
(start - end)
42 (122 - 163)285 (124 - 408)
definitionCHROMAT_FILE: MSMg01no174_o08.b1 PHD_FILE: MSMg01no174_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:51 2005CHROMAT_FILE: MSMg01no174_o08.g1 PHD_FILE: MSMg01no174_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTTCTTTTCTTTTTTTTTTTTTGTTACTACCCCATCTACNTTTTTC
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGTAATTCATGAGTACCTCGCACCTCTCGCGAGACTTCCAGCCCAAGGAA
CGAGATCCGAGGAGTGTGCGGCCCGCGACCGAAGGAAGTGTGGAATGCTT
TTAGAAAGTTTGAAAAGGAATGCGTGCGTCTTTAGGAACTTTCTCTTTCT
TTATTTTTTATTTTTAATTCCGAAATTATTATGCATGGTTTTTACGTGAC
AGTATTCAAAGACAGTCTTGATGCGTACGACACACCATCCACAACCTCTG
TATTTCGCCTAGGTAACCTCTGCTCCTGTTATTTACACGCCTTCCGACTC
GATACGTTTCAGGTTAATTTTTTTTTGCACACCCCCCCCTTTTTTTTATT
TCTACTTTTACCTTCTTTACTCTACCCCTTCACATATTAAAATATTCACT
TTGTTCCCTTTATATTATTCTCTCGCCCCGCCCTTTCCCATTTGTATCCC
CTCCCCCCTCTCTTCCTTTCACGCCACGACTTGGTTTTTTTTTCCCCATT
TTTTTCTTTAGCCCCCGCGTTCTTTCCTTTTACCTACACGTTTTTCCGTT
TGATTTCCCTTTCTTTTTCCCCCCTTAACGTCCTCTTCCTTACCTAGTGC
TTTTTTTCTCCGCTTCGCCGTTTTTCCACCTTATTTTCCCCCGCCCATTT
TCTTTCACCACCGTATTTCCCCCCCTACTTTTTTTTTCCCCCCCTTGTTT
TTTCCACCCCCCTTTCTTTTTGTTGTTTCCATTATCCCATTTTTTTTCGC
CCCTTTTTTCTCCCTTTTTTCTCCCACCCCTTTTCTTTCTCCCCGCTCTT
TGTTCTTTTTC
CCGCTCTTCTCNNCTCTCTTGTTNNNTTTTTTATTTAATAANNNNTTTCT
ATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGGAGGTGGTTTTCCTAACAAGTTG
TTTGACTTCGTAAGTTCTCTGACCCCTCAGTTTTTGCTCCATGACTTCCA
GTTCATGGCTTTAGTTGGTATACACGGCTCTCATCCCTTTCAATGTCTCG
CTCACCCTAGGGCATGGAAACCCTTCTCTTTCTCTGCTACTTACAGAAAG
TTTGATCTCCAACCTAACAAACAAATGGAATAAAACTATCAATCTCTTGG
ATCTCAAAACCGCAGGCTCCCAGGGTCTGAGTTGTTTTTCTCTTCACGGA
AACAAGGCAAGGTTCTTATTTTGCTCCCCCCCCCCTCGCTTCAGATAGTG
TACTTCATTGTGCAAAGGCCCGCCTCAGTATCTATGAACACGCATTATGC
GTTGCTGCCTTGTCCACCCTCCATTGGACATTCAGCACAGTACAGGCTAT
AACCTTTAGTGTGTTATTTCGCCCAGCGTCATCCCCCTGTGCCTTATCTG
TCCGTTATTACACCCTATTTCTTTCCCATCACCCTATAAATCTCTTGTGT
TTGTTTCACCCATTTTAATCCTCCCCTTTTTCGCGGTTTTATTTCCCCCA
CTATTTTTCGCCCCCGATTTTCTTTTTCCCCCCCCCTCTTCCCTTTCCCC
CGACCTTTTTTATTTGCCCTTTTTGTCGTCATACCCTTGTCCTCTATAAT
AACTTTTTATTCCCCCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_o08.g1 MSMg01no174_o08.g1 CHROMAT_FILE:
MSMg01no174_o08.g1 PHD_FILE: MSMg01no174_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:52 2005
         (285 letters)



>mm_chr18_75017706_75018389
          Length = 684

 Score =  489 bits (253), Expect = e-143
 Identities = 276/287 (96%), Gaps = 7/287 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggaggtggttttcctaacaagttgtttgacttcgtaagttctctgacccc---tcag 57
           |||||||||||||||||||||||||||||||||||||||||||||||||       ||||
Sbjct: 201 tgtggaggtggttttcctaacaagttgtttgacttcgtaagttctctga----gattcag 256

                                                                       
Query: 58  tttttgctccatgacttccagttcatggctttagttggtatacacggctctcatcccttt 117
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 257 tttttgctccatgacttccagttcatggctttagttgggatacacggctctcatcccttt 316

                                                                       
Query: 118 caatgtctcgctcaccctagggcatggaaacccttctctttctctgctacttacagaaag 177
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caatgtctcgctcaccctaaggcatggaaacccttctctttctctgctacttacagaaag 376

                                                                       
Query: 178 tttgatctccaacctaacaaacaaatggaataaaactatcaatctcttggatctcaaaac 237
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 377 ttcgatctccaacctaacaaacaaatggaagaaaactatcaatctcttggatctcaaaac 436

                                                          
Query: 238 cgcaggctcccagggtctgagttgtttttctcttcacggaaacaagg 284
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cgcaggctcccagggtctgagttgtttttctcttcacggaaacaagg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)