BAC Information

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BAC

Clone NameMSMg01-175H15
Chromosome18 (Build37)
Map Location 33,768,053 - 33,768,319
singlet/doubletsinglet
Overlap geneLOC666281
Upstream geneLOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
Downstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H15.T7 (MSMg01no175_h15.b1)MSMg01-175H15.TJ (MSMg01no175_h15.g1)
ACCAG370455AG370456
length718708
length of high quality
(start - end)
244 (73 - 316)263 (75 - 337)
definitionCHROMAT_FILE: MSMg01no175_h15.b1 PHD_FILE: MSMg01no175_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:33 2005CHROMAT_FILE: MSMg01no175_h15.g1 PHD_FILE: MSMg01no175_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGGAGGCGCGGAAT
TCAAAATATTTCATAAAGAAGATGATATGATATTATACTTAAGTGACCCC
CAAAATTCCACCAGATTAACCCTAAACCTGATAAACAACTTCAGCAAAGT
GGCTGTATATAAAATTAACTCAAACAAATCAGTGGTCTTCCTCTATAAAT
AGACCGAGAAAGAAATCAGGGAAACAAAACCCTTCACAATAGTCATAAAT
AATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TAACAAGAAGCTCATTATTCTTAAGAAAGAAATTGATAAAGATCTCAGAA
GATGTTTATTCTCCCACCCTCACCCACTGGTAGGATTAATTTAGTAAAAA
TTGCCATCTTGCCCAAAACAAAATACAGATTCAAGGCAATCCCCATCAAA
ATTCCAACTCAATTCTTCATAGAGTTAGAAAGAGCAATTTCCAAATTCAT
CTGGAATGACAAAAAACCCAGGATAGTGAAAACTATTCTCAACAATAAAA
GAACTTCTGTCAGAATCACCACCCCTGACCTCAAGCTGTACTACAGAGCA
ATTGTGATAAAAACTGCATGGTACTGGTACAGTGACAGATAGGTAAATCA
ATTGAATAGAACTGAAGACCCAGAAATGAGCCTACACACCTATGGTCACT
TGCTCTTTGGCAAGGAGC
CATTGCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCTAACCCTATCAAAGGAACTAT
GGCACTAAGAAAGAGAGAGAGAGAGAGAGCAATCCCCCAGATCTTGGAAG
CTCTATTTTTTTCTTATTAATAGCTTTATTGACCTTTCGGCTTGTTATAG
TCCTTTTTTTTAGCCATTAAAGATTTTTATTAGATATTTTCTTTATTTAC
ACTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCTGAAAATCCCCAACC
CCCTCCCCCGCTCCCCAACCCATCCACTCCCAATCCTGGCCCTGGCATTC
CCCTATATTGTTTTTTAAACCCTCCCCCCGGACCAAGGGCCTCTCCTCCC
ATTAAGGACCGACCACCCCACTCTCTGATACAAATATCGCTAGAGCCACA
AGTTCCACCATGTGCTTTCTTTGATTGGGGGTATAGTTCTAAGGAGCTCT
GAAGGAACTGGTTAGTTCGCATTGATGTCCCTTCTATGGGGCTCCAGTCC
CCTTCAGCTCCCTGGGAATTTCTTTGGCTCCTTCATTGGCCACCTTGTGC
TCCTTCCAATGTATGACCGTGAGCATCTACTTCTGTATTTGCTCCGCGCT
GGTTGGTCCCCCAACGAAACAGCTATATCCTGCTTTCGTCGACGGTTTCT
TGTCGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h15.g1 MSMg01no175_h15.g1 CHROMAT_FILE:
MSMg01no175_h15.g1 PHD_FILE: MSMg01no175_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:33 2005
         (263 letters)



>mm_chr18_33767967_33768633
          Length = 667

 Score =  466 bits (241), Expect = e-136
 Identities = 259/267 (97%), Gaps = 4/267 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctaaccctatcaaaggaactatggcactaagaa----agagagagagagagagagc 56
           |||||||||||||||| ||||||||||||||||||||    |||||||||||||||||||
Sbjct: 353 tctgctaaccctatcagaggaactatggcactaagaaagagagagagagagagagagagc 294

                                                                       
Query: 57  aatcccccagatcttggaagctctatttttttcttattaatagctttattgacctttcgg 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 aatcccccagatcttggaagctctatttttttcttattaatagctttattgaccttccgg 234

                                                                       
Query: 117 cttgttatagtccttttttttagccattaaagatttttattagatattttctttatttac 176
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 233 cttgttatagttcttttttttagtcattaaagatttttattagatattttctttatttac 174

                                                                       
Query: 177 acttcaaatgttatcccctttcctagtttcccctctgaaaatccccaaccccctcccccg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acttcaaatgttatcccctttcctagtttcccctctgaaaatccccaaccccctcccccg 114

                                      
Query: 237 ctccccaacccatccactcccaatcct 263
           |||||||||||||||||||||||||||
Sbjct: 113 ctccccaacccatccactcccaatcct 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 667
Length adjustment: 9
Effective length of query: 254
Effective length of database: 658
Effective search space:   167132
Effective search space used:   167132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)