Query= MSMg01no175_m09.b1 MSMg01no175_m09.b1 CHROMAT_FILE:
MSMg01no175_m09.b1 PHD_FILE: MSMg01no175_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:55 2005
(204 letters)
>mm_chr18_86926253_86926856
Length = 604
Score = 379 bits (196), Expect = e-110
Identities = 202/204 (99%)
Strand = Plus / Minus
Query: 1 aatatcctgatgtgaacaactcagcaacgtgtaaccttgtatatgcaactagatattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatatcctgatgtgaacaactcagcaacgtgtaaccttgtatatgcaactagatattgat 345
Query: 61 aaataggagactagatcagcttgctttgccctaatatattgcgaatccttatataacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 344 aaataggagactagatcagcttgctttgccctaatatattgcgaatccttataaaacagg 285
Query: 121 aaatattaaattgctttaaatgttgcattgattatgagcccaaagaatacatcaacatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaatattaaattgctttaaatgttgcattgattatgagcccaaagaatacatcaacatag 225
Query: 181 caacactaaaattaatttttcttt 204
|||||||||||||| |||||||||
Sbjct: 224 caacactaaaattactttttcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space: 116816
Effective search space used: 116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no175_m09.g1 MSMg01no175_m09.g1 CHROMAT_FILE:
MSMg01no175_m09.g1 PHD_FILE: MSMg01no175_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:56 2005
(486 letters)
>mm_chr18_86797053_86797937
Length = 885
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 1 ttctgggggctgtttctgaaaagcaagttgaaagtattaagagatgatcggggaggccca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttctgggggctgtttctgaaaagcaagttgaaagtattaagagatgat-ggggaggccca 259
Query: 61 caattcccaagagcatgggggctaggggtttatataaaacacagtttcagagagaaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caattcccaagagcatgggggctaggggtttatataaaacacagtttcagagagaaaaag 319
Query: 121 agaagtattagaacagctgtgttaagtaaagactgaggattgagctggtgttcgccatca 180
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 agaagtattagaacacctgtgttaagtaaagactgaggattgagctcgtgttcgccatca 379
Query: 181 ggtgaacccagagattatcagaagggaatcttagttatgcagaagtgcttgttgcttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtgaacccagagattatcagaagggaatcttagttatgcagaagtgcttgttgcttgtt 439
Query: 241 gcttgttgagttcctcacagagttcatattaggacacacagagttcaatgtcccatgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcttgttgagttcctcacagagttcatattaggacacacagagttcaatgtcccatgcta 499
Query: 301 aggatgaccccactcttccttaacttttgtatctcctgagcaccttgcttaaagagtgac 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 aggatgaccccactcttccttaacttttgtatctcctgagcactttgcttaaagagtgac 559
Query: 361 tagaaacatcatatgaagagtgacttctggtaatcatcttccgctgtggcaggccctcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagaaacatcatatgaagagtgacttctggtaatcatcttccgctgtggcaggccctcaa 619
Query: 421 ggtcccataagccactgagtatttgtttctacaaattctacatgcatgaacagctttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggtcccataagccactgagtatttgtttctacaaattctacatgcatgaacagctttcca 679
Query: 481 gcacca 486
||||||
Sbjct: 680 gcacca 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
