BAC Information

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BAC

Clone NameMSMg01-175N04
Chromosome18 (Build37)
Map Location 39,862,759 - 39,862,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175N04.T7 (MSMg01no175_n04.b1)MSMg01-175N04.TJ (MSMg01no175_n04.g1)
ACCAG370700AG370701
length771725
length of high quality
(start - end)
284 (134 - 417)230 (137 - 366)
definitionCHROMAT_FILE: MSMg01no175_n04.b1 PHD_FILE: MSMg01no175_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:59 2005CHROMAT_FILE: MSMg01no175_n04.g1 PHD_FILE: MSMg01no175_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNTTTTNNNNAATTTACATTATCNNNNNNNTTTTATNNN
NNCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCACACC
AACCGCGGAATTCAAAATGTTTTCCATGAAATGAAAAAGAATTTGGTAAA
TTCTTATATGTAGATTTATATGACCCAAACAATTACATTCTTTACCCAAA
TTTAAGTGAATATTTATGCTCACAGGAAATCTGTAGGCAAAGCTCTAAAG
TACTCTTATTTATAATGACCCCCAGTTGGGAAAATCCCAAGAGAACTGGA
GAAATAATAAATAAGTTGTCTGTCTTTTTTAAAAAATATTTTTATTAAAT
ATGTTCTTTATTTACATTTCGAATGTTATCTCTTTTCCTAGTTTGCTGTT
GCAGTGAATTCACCATATTTGTGCCACGCCCCACCGCATCAGTGTATTCC
TCTTAAGCCAGAAAAACGGGTTGCCCTTACACCCCATCCTTAGCATGCAC
TGGATTATCCTTAGGTAAAGCATCAGATCTCCTACAGCACTACATGAGGA
AGTGATTTCCCCTTCAATCTCTTTTGTTGCTGACTTCATCAAACAGGACT
TCTGGGTTTCGAGTTGTCAAGCTTTCAACATTAGATCATGTCAATATTTA
CCCAAAATGAGTAGGGTATCAGCTTAAGACCTTATGGAGACACCTCATAG
AGCAATTTCACTTTTCACATTGGGCTATACAGGCCTGTTGCATAATTAAA
CTAATAATGTAAGGTTTCCTA
CGACCCCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATATTCAACATCTGGCAGA
TGTGCACAGACAGAATTTCAGAAAGTTTATGCCATAGCTGTGGGGTTTCT
TCTTTTCTCCCTTTCTTCTGGAAAAACAAATAAAACTCCTTTCACTTTGA
TAACTGACCATCAAGGCCTTAATACAACTTGAAGTAGTATTTATTATTGA
ATTAAGCAAAATGGGCAGAGTCTTCACCCTGGAAATACTATTTGTGACTA
CTCAAGACAGCATTTGGTGATTGCGTATTTGATCAAGCATTCATATATTC
ATCCATGAATGAATATTTTTTTTTTGTCCCCCGCACCCCCGCAAGGGTTT
AAGTAGGAAATTAGGGACATAAGTGAGACAAATAAATATAAGAACATGTT
CATGTTCTCTCCCTGGTTGCGAGGGTCAAGAAATTTAAGTAAGGTTACAA
TCATGTTAAGTGTTCTGAAGGCGCTGGGTAGTACTGTGAACAGAGAATGG
TGTAAGGAGGGGCGTGAGATAAGCTGAAGGGATCCTGGGGATAGTTGGGT
CTCTGAGTCTGCGGCTATGAGAAGGATTTGCTTTGATGGTCTTAAACACT
GCTTTTGTTTTATTAGGGAGTGTTCAAAGACCAATTTTATAGGATGGGAA
ATTGATGTAGAGGCTTTGAATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_n04.g1 MSMg01no175_n04.g1 CHROMAT_FILE:
MSMg01no175_n04.g1 PHD_FILE: MSMg01no175_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:59 2005
         (230 letters)



>mm_chr18_39862559_39863189
          Length = 631

 Score =  416 bits (215), Expect = e-121
 Identities = 227/231 (98%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtggggtttcttcttttctccctttcttctggaaaa-acaaataaaactcctttcac 59
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gctgtggggtttcttcttttctccctttcttctggaaaacacaaataaaactcctttcac 260

                                                                       
Query: 60  tttgataactgaccatcaaggccttaatacaacttgaagtagtatttattattgaattaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgataactgaccatcaaggccttaatacaacttgaagtagtatttattattgaattaa 320

                                                                       
Query: 120 gcaaaatgggcagagtcttcaccctggaaatactatttgtgactactcaagacagcattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaatgggcagagtcttcaccctggaaatactatttgtgactactcaagacagcattt 380

                                                              
Query: 180 ggtgattgcgtatttgatcaagcattcatatattcatccatgaatgaatat 230
           |||||||||| |  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgattgcgcaaatgatcaagcattcatatattcatccatgaatgaatat 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 631
Length adjustment: 9
Effective length of query: 221
Effective length of database: 622
Effective search space:   137462
Effective search space used:   137462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)