BAC Information

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BAC

Clone NameMSMg01-176P13
Chromosome18 (Build37)
Map Location 71,577,400 - 71,577,673
singlet/doubletsinglet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176P13.T7 (MSMg01no176_p13.b1)MSMg01-176P13.TJ (MSMg01no176_p13.g1)
ACCAG371506AG371507
length1,4901,325
length of high quality
(start - end)
---274 (118 - 391)
definitionCHROMAT_FILE: MSMg01no176_p13.b1 PHD_FILE: MSMg01no176_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:23 2005CHROMAT_FILE: MSMg01no176_p13.g1 PHD_FILE: MSMg01no176_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGGCGCTAACATCCTAAGGGAGAGGATCCGCGGAATTCCTGTGCAT
TAATTTCCCTTTAAGCCCCCTAATATTCTTCCCCCGCTCTTCAGAGCCCT
TTAAATCCCCGCCCCACCAAGCTTGTTATCCATGAAGGGAGTGTATTGTG
ATGGAAAAAGGACCAGCCTCACTATCCTAACCACCATGGTGACCCACGCT
CTGAACCTTGACCAAGACAACTCTTCCCTCCAATACTCCACTTCATTTTA
CTCTGTAAACGCTACCTCTTACACCACAGCTCATTATAATACCCTCTATA
CTACCACTGACACTCTCCTTTCTCAATGCAACAACCAATAACATGATCCT
CCTCCTTCTTAACTTACTCCCATTCTCCCCCCCTCTCCTTTTTTTTTTTT
CTTACCCCCTTCCCTCCCCACTTCTCTTACACACTCATCCCCCCCCTCTT
TTTTTCCCCCCCCCCCTCTAGCTTTCTCATTTCTTTCCTACAACAATTAC
TTCCTATCTACTTCTCTCCTTCATCAATCTCCTACTTTCTCACTCCCTCC
TCACCCTCTCAATATTTTCTACCCACTTCTCCTATATTTCCACTCTTTAA
CATTATCCTCCTTTATTTCCACCTCCCACTCTCCCTCCTTCACCCTTATC
CTCCTTTTCTCCCCTCCTCCCTCTCTTTCCAACCTACTCTCTCTTCATTC
TCTTTCACTCTCCTCTCCCCACCACCCTCCCTTACCCCTCCCATTACCTA
TCTCTCCATTAACTCCTCACCTACCTCCTTCCTTACTCACTCTCCCCTAC
CATCAAATTCCTTCCTCTCATTCCCCACCCTATTCCCCCTACCTCCCTCT
TCTTCCACCCTATCCCTCTTACCCGTCTCCCTTCCACTACTTCCTTCTCT
CACCTACTCTCCCCCTCTCTCACCCCAACCTACCCTCTCTATTATACTAT
TCATTTCCCCATACTCATCAATCTTCATCATCTCAACTCTCACACAATTA
CTACCCTCATCCACAACTGCATCACTCACTCTCCATCTCCATCTACCTTC
TTACTCACTCATCCCTAACCCTTTCATATCTATTAGCTCTCTATCTCTCC
TTACACCCTACCTCCTTTAAACTCCACCTTTCCTCACACTCCTCACAATC
CTATCTCCTCAACTTATCATCTATCTTCTACCCTATTCTCAATCGCATTC
AATATATTGTCCACTATATTATCATTTTCTCTCTCTCTCCTACTCCTCAA
CTATTTCTCCTTTCTTATAGTCTCACTCCTCCTATTCTTAACCTCTTCTA
GTCATACCCTCATCTTCATCTCACTCTAGACTGACATTCCCTTCATTATC
TATCCCTCTCTACCTCATCCCTCCCTCTACCATGTCTGCATTCCCACTCA
TTTACACTCCCTACCTTCCCTTCCTGTCACTCTCGCTCTAACTTTTCTCT
CTCTTACAATACTGTATTCCTCACACCTATCCACCCCTTC
NNCCGAGCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCTATATCCCATAAGCTGTAAAATACAAATTCAT
GAGTAACGTTGAACTCACACTTACTCTCTTCTTCTTTCTAGTCATGGTTT
TGCTACTGAGATACACCTCAGCCTTTCTCTTTGTTCTTTTGAACACATCT
TAAAAGATGTTCTTCATCTGGATTAACATTTAGGGAAAGCACCAATGTGA
ATTTCACAATGTGGTAAACCTCCACTATTTTTCTCATTTCTTTGTAATGA
AGAAAATCATTACGAAAGGACACAGTGCAATCATGTAGTTTTTCTTTCCA
GCTTTGCTTGTTTTGCAATGCATTTATCCTTACTGTCAGTAGCTCTTTTT
TGTTAACCTGCCTTGTCTGGTTAGTGTATTAAAGATGCACTGTCCTATTT
TTTTTCCCCCCCCCCAAGTTTTTCTTCTCCTCCCCAAAAAAAAGGGTGAT
TTTTTTTTTTTATTTTTTTTCATCTTTTCTTTTTTATTTTCTTCCTCTAT
CTTACTCTCTTTATTTTTTTTTCTATACTTTTCCTTCTCTCACTTTATCT
TCTTATTCTCTCTTTTATTCTATCCTCTTTTTCTATATCATTCACATTAT
ATTCATTCTTCCTTTTCATTTCTCCTATTCTTTTATTCTCTTCTTTTTTT
TACTTTCTTACCTCCATATTCTCTCTTTCTTTACTTTTTACTCCTTTTCT
TATTTTCTTCCTCATCTCTTCATTTTATTTAATCTCATCTTCTATCTTTT
TCTCTTACTACTTCTCCTTATTTTATTCTTTTCTCTTTTATTCTTATTTT
CTCATTCTCTCCTTCCCACTCTTTTTTATCTCTCTTTTTCCTTTCTCTTC
TCTTTTATTCTTCATCCTTAATTTTATTCCTATTTTCCCTATTCTTCTCT
CTCTATTTCTTTTATCTCCTTTTCTACTCTTTCTTTTTTCTTTCTCTCTT
CCATCCCTCATCTCACTCACCTATCTTCTATTCTAATCCTTCTCTTTTCT
CCGTTCTTTTCTTAACCTTTTACTTCTTCTCCTTTTCTTTTTCCATCTTA
AGGTCCTCTTCTCACTTTCCTTTCTTCCTACTCTTTTCTTATCTATTTTT
CTCCTATCTNTTTTATTTTTCCTATACCTTATCTTGTTTCTTTCCTTATC
TTCTCTCTTTTTTCATCACTTTCTTCCTCTTTTCTTTCCTGTTTCCTCTC
GTTTCTACTCTCCATCACTTTCGTCAATCAACCTCTTTCGTTTCTACTCA
TATTCCGTTCTTCACATTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_p13.g1 MSMg01no176_p13.g1 CHROMAT_FILE:
MSMg01no176_p13.g1 PHD_FILE: MSMg01no176_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:24 2005
         (274 letters)



>mm_chr18_71577200_71577873
          Length = 674

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttactctcttcttctttctagtcatggttttgctactgagatacacctcagcctttc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cacttactctcttcttctttctagtcatggttttgcgactgagatacacctcagcctttc 260

                                                                       
Query: 61  tctttgttcttttgaacacatcttaaaagatgttcttcatctggattaacatttagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgttcttttgaacacatcttaaaagatgttcttcatctggattaacatttagggaa 320

                                                                       
Query: 121 agcaccaatgtgaatttcacaatgtggtaaacctccactatttttctcatttctttgtaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaccaatgtgaatttcacaatgaggtaaacctccactatttttctcatttctttgtaa 380

                                                                       
Query: 181 tgaagaaaatcattacgaaaggacacagtgcaatcatgtagtttttctttccagctttgc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagaaaatcattatgaaaggacacagtgcaatcatgtagtttttctttccagctttgc 440

                                             
Query: 241 ttgttttgcaatgcatttatccttactgtcagta 274
           |||||||||||||||||||| |||||||||||||
Sbjct: 441 ttgttttgcaatgcatttattcttactgtcagta 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)