BAC Information

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BAC

Clone NameMSMg01-177J24
Chromosome18 (Build37)
Map Location 61,746,360 - 61,746,656
singlet/doubletsinglet
Overlap geneCsnk1a1
Upstream geneMyoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik
Downstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177J24.T7 (MSMg01no177_j24.b1)MSMg01-177J24.TJ (MSMg01no177_j24.g1)
ACCAG371958AG371959
length714742
length of high quality
(start - end)
306 (36 - 341)---
definitionCHROMAT_FILE: MSMg01no177_j24.b1 PHD_FILE: MSMg01no177_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:13 2005CHROMAT_FILE: MSMg01no177_j24.g1 PHD_FILE: MSMg01no177_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAA
TCCCGAACTTTTTATACCACTAAGAAATGATTTCTATATAAAACCCTCGT
GCTAAACTTACCACTTTTCTACTTCCATTGCTGCATTAAAAAGACCAACT
CTCATGACTAACTCCCAAACTAGAAATACTCCATGTACTTTCCAAATTGT
CCTGATCCACCACAGTTCTCTCTCCTCATGAGGGAACCCAGGGCTGCTAC
CTTTAATGGCTGGTCATTTTTTTTTTTTTTTTTTTACTTAACACAGAATA
AACAGTCTACCTCTTAGTAACACAAACATCCCATAAAGGCCATTTGGTCT
ATTCTCTTCCAAACCTGACGTGACCTAACTACATTTCAGACCATTTCTTG
ACTCCCCACAAACAAAACCAGCACGCAAACCACTAGCATGACAACCCCCA
CGCTTCTGTCAGTAATATACTGATCCCCCTCCCTTTCCTCTTCAAGCACT
GGATTTTTCCTTTGGGCTTCATGAAATATATAAAATTTTCCTACTACTTA
CTTTTTATTACAAATGTTTTCAAGAATAAAAATGCAGAGACATTATTACA
CATTTATAATCATCATTTAAAAAAAAAATGCATTTTCACCGTGAAACTAA
AAACTTCTCATCTTGGGAGAAAGACTAAACTTCCTCGTGTACTGATTAAC
ACACTATCCTAAGG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTGGAACCTCTCCGAAGAC
CTTTGACCAAAGAGGAAATGCTACAGCCCGTGACTATTAACATGACGCTC
TGATCTGATTCTCCAATGAAGTGTTCAGGAGCATGAGACCCCATGACCTG
TAGAACCTGCCTCATCTCTGACTCGGAAACTGGCCCTGAATACTATCGCT
GCATACTTGGTGGATCACTGACCTTTATGAGAAGACACTGTTCCAAAACC
GTGAGTCTCATATCACCTTCCTTCACAGTTTGGTCACACTCACCGGCCTG
GCTTGATATCGTGGCCTTTATTTCTTCCCACCCGCCGCCTGTTCATGGAT
TTGCGATGATATCCTACGTATGCCCACCACGGGACAAGATCAACAGATTC
CCCCCGTGTCATTAAACTGCGAGAGGGACTTTATGGCACATCAACAGTGA
CAGCTGTAAAGTCATGATGCTCCAATGGCGATAACCACCGATAATGCAGG
AAGACGGAAAATAAGTGAATATCAATCTCCCGTACTCTATGATTAAAATT
AGGGTAAACGGGTCAAAAAGGGGATGAGCGGCTAAAGTAGAGAAAAAGTT
GTAAAAGGGGGGTAAATGGTACCTCAAACGTGGAACCCAACGCCTGACTT
GCTTTTCCCCATTAATTCCTGCGGATTCACTTTTCTTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_j24.b1 MSMg01no177_j24.b1 CHROMAT_FILE:
MSMg01no177_j24.b1 PHD_FILE: MSMg01no177_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:13 2005
         (306 letters)



>mm_chr18_61746227_61746932
          Length = 706

 Score =  514 bits (266), Expect = e-150
 Identities = 291/302 (96%), Gaps = 5/302 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaatcccgaactttttataccactaagaaatgatttctatataaaaccctcg 64
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaattcattaaacatgaactttttataccactaagaaatgatttctatataaaaccctcg 371

                                                                       
Query: 65  tgctaaacttaccacttttctacttccattgctgcattaaaaagaccaactctcatgact 124
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 370 tgctaaacttactacttttctacttccattgctgcattaaaaagaccaagtctcatgact 311

                                                                       
Query: 125 aactcccaaactagaaatactccatgtactttccaaattgtcctgatccaccacagttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aactcccaaactagaaatactccatgtactttccaaattgtcctgatccaccacagttct 251

                                                                       
Query: 185 ctctcctcatgagggaacccagggctgctacctttaatggctggtcattttttttttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 250 ctctcctcatgagggaacccagggctgctacctttaatggctggtc-----ttttttttt 196

                                                                       
Query: 245 ttttttacttaacacagaataaacagtctacctcttagtaacacaaacatcccataaagg 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttttttacttaagacagaataaacagtctacctcttagtaacacaaacatcccataaagg 136

             
Query: 305 cc 306
           ||
Sbjct: 135 cc 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)