BAC Information

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BAC

Clone NameMSMg01-178I14
Chromosome18 (Build37)
Map Location 3,980,992 - 3,981,330
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549
Downstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178I14.T7 (MSMg01no178_i14.b1)MSMg01-178I14.TJ (MSMg01no178_i14.g1)
ACCAG372593AG372594
length753737
length of high quality
(start - end)
124 (46 - 169)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no178_i14.b1 PHD_FILE: MSMg01no178_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:21 2005CHROMAT_FILE: MSMg01no178_i14.g1 PHD_FILE: MSMg01no178_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATTTTTGCCACCCTTTTATCATGAAAGTGTGTTGGATTTTGT
CAAATGCTTTCTCAGCATCTAATGAGATGACCATGTGGATTTTGTTTTTG
AATTTGTTTATATAGTGGATTATGTATATTGAAACATCCCTGCAACCTAG
TAATGACGTGCACACAACAGGATAAAAAGACCCTGGGAAATTTCACGCGC
TTTTCTGTAAAAGCTGATTTTTAACTATCTTTTCTCCTATGAGATCATAA
TATAATTACATCGAATCTCCTTTCAAACCTTCTACATATCCACCCCTCCG
TTCTCATTTAAATTCATCACCCCCCCTCCATAATTGTTGGCATAAACTCT
CTCTCTCTCCCTCTCCCCCTCGCAAGATAGTTCACTCTCACTCAGTCACT
TCCTAAATGACTACAATCATCTACCTTTTCATACCAACTACCACTCCGAT
CCTATACACCCTCGCCCTAATCTATTTCACTGTCACTTCCCCCAATTCAA
TTACCCCCCTATCACCCTTTTCTTTTTACTTTCCCCCCCCCCCCCCCACA
TCATCCCTATAAATTTTATTCCCCTTACCCTCTCCTTATCCCCCCCAATT
ATCCACCCCCGTATCCCTTTATTGTTATCACCCATCACACTACCCCTCAC
CTCTCTTCACCTTAAAATAACAATCATCTACTACACTCAAGTCCCCACCA
ATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTGCCTACAGTCTTGATGCAG
ATGTACTGGAGTTATAGACCTGTACTTACTGTGGCCTTTGGATGAGTCCT
TGACCCCCATTCAGGTCCTCACCCTTACATAACGAGTGCTTTGCCCACTA
GACCATCTTTCCAGCTCCTATGACAACTTTTAATTTCTGGGCTGAGCCCT
CAGTTCTGGAGGCCCTCTCCCTCCCTCCTGTTGATTTGTTATTGCTGTTG
CTCAGGCTAGTCTCTAACTTCTGGGCTCCAACTATCCTTCTGCCAAGCTT
CCTTAGCAGTAGTAACTATAGGCATCCCACTCCAACTTCTCTGTACTTCT
AGAGCGAGAAAGACCCCTGGTTTGGCGGAAGGTGTCNTTTCCCGGTAATA
CACTTCGCCACATTTCCTCCTCGTCCTCTTCCCCCTTTACCCTGTTCAAA
AATCACGGGTGTGTACAGTATTCTTTTATTTACTTCCATTTGTTTTTCGA
TATTGTTCCACCACTTCCACTATCCTATCCCCCATTTTTATTGTTCTTTC
TGGCGGTTTTTCCTTGTCCGTTCTTTCCGTTTCCTCATTACCACCTACAC
CTCCCTTTTTTTCTTCTATTTATAAACAACAGCCGACCCGGTTTTCTTTC
TTCCGTTTCGCCTACTCTTCTCACCCCCCTCTTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_i14.g1 MSMg01no178_i14.g1 CHROMAT_FILE:
MSMg01no178_i14.g1 PHD_FILE: MSMg01no178_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
         (339 letters)



>mm_chr18_3980648_3981386
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctctgcctacagtcttgatgcagatgtactggagttatagacctgtacttactgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtctctgcctacagtcttgatgcagatgtactggagttatagacctgtacttactgtgg 624

                                                                       
Query: 61  cctttggatgagtccttgacccccattcaggtcctcacccttacataacgagtgctttgc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cctttggatgagtccttggcccccattcaggtcctcacccttacataacgagtgctttgc 564

                                                                       
Query: 121 ccactagaccatctttccagctcctatgacaacttttaatttctgggctgagccctcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccactagaccatctttccagctcctatgacaacttttaatttctgggctgagccctcagt 504

                                                                       
Query: 181 tctggaggccctctccctccctcctgttgatttgttattgctgttgctcaggctagtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctggaggccctctccctccctcctgttgatttgttattgctgttgctcaggctagtctc 444

                                                                       
Query: 241 taacttctgggctccaactatccttctgccaagcttccttagcagtagtaactataggca 300
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 443 taacttctgggctccaactatctttctgccaagcttccttagcagcagtaactataggca 384

                                                  
Query: 301 tcccactccaacttctctgtacttctagagcgagaaaga 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcccactccaacttctctgtacttctagagcgagaaaga 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)