BAC Information

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BAC

Clone NameMSMg01-178L10
Chromosome18 (Build37)
Map Location 46,860,686 - 46,861,001
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226
Downstream geneCdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178L10.T7 (MSMg01no178_l10.b1)MSMg01-178L10.TJ (MSMg01no178_l10.g1)
ACCAG372716AG372717
length732728
length of high quality
(start - end)
---316 (195 - 510)
definitionCHROMAT_FILE: MSMg01no178_l10.b1 PHD_FILE: MSMg01no178_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005CHROMAT_FILE: MSMg01no178_l10.g1 PHD_FILE: MSMg01no178_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATTATCCTTATATATCTGTTCTAATTATCTTAAGAATGATGAT
ACCAGCCAGATGGATCAGCACCTTAAGATGCTAGCTGCCAAGCCAGCTGA
TCTTAGATTGACCCCCATGACCCTCAGGTGGCACGGTTAAACACAGTTCC
CAAAAGTTATCCCCTGATACTTCTTACACCCTGACTCAGGCCCTGCTTAC
CTGAATGCAATTTTTGATCAGATAATGCTTCCAATAACTTATTAGTCAAA
AGGAGCTTGTAAAACCCTGTCATGTTAAATTAGCAGATGTGAACCGCCCT
TCCCTGCTATCTTAGAACAAGGGAAAACACACTCAATGCTTCTGTTTCTG
AGTTCTATAGGCGTGCATTACCTGAGATGAAATATAGTAATGCATACTTG
TGAATAGAACCTTTCGAAAGATTTTTCTTTTTGAGATAAGGGCTTTCTAC
ATAGCCCTGGATGGTCTTGAACTCACTGAGCTCTGGCCACCTCTGTCCCA
TGACTCTGGAATTAAGAGCTCATACCACCATACATAGTTCTGAAAGGTTC
CTACTGAAAACTTACCTGCGTGCAGTTTATGGGAAGATTATGGCTGATCT
ATTATATAAGGCAATCTTATTTTATACCAAGTGTTGCGCAAGAATTACAG
ACTCCTAGATTTGTTTGGTACTATTGCCGATA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAAAACCCATGAGCCTAGATTTGG
CTGTTTTGGGGACCGCTGCTATGACCCTGAACCAATGGTTGTAAACAGCA
AACTGTGGCAGCTGAACAGAGAGGACGCCTCGGTGCTGACTTGGCCATTC
CCTTTTTATTGGTCCCTTGATGCTTTTACAGGGTGTCAAGAGAAGCTGGT
GGGAGCGTGGCCCTTGCAGTGTTGGACATCTTCTTTGTGGGGCACAGGTG
AAGGTGTTACGCCTTTCATTGGCCAGTTATGCTCAGTAAGTTCTCAGATC
TTTAGTTTTAACGTACTCATGCTCATACGACACATATGCCTAGACTACTC
TGGTGAGATCATAAACAGTATCTTTTTCTCTTTAGAGATAAGGTTATTTA
TCAGTCTGTGGTTCATGTGCAGTGCCAAACAGATAGGTGGTGGTGCCTGT
GTGCCTCACGGCATGTGTAGCCATCCTGCCCCTGTATCTGAACTCAAAAT
GTATACTGACGCCTCCACTAAAATGAATTACCTCAGGTTTTACACTGCCT
GTACGTGTTTTTTACTCCCCGTATGTATGATAATTTTCCCGGCCTGCGGG
CTTGGCCTGATTTCCTTTCGTTCCCCAGCACCCTCCTAGTAGTTTTTCTA
ACTCTCTTAGCCATTTTTTTATGTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_l10.g1 MSMg01no178_l10.g1 CHROMAT_FILE:
MSMg01no178_l10.g1 PHD_FILE: MSMg01no178_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
         (316 letters)



>mm_chr18_46860486_46861201
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattccctttttattggtcccttgatgcttttacagggtgtcaagagaagctggtggga 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ccattccctttttattggtcccttgatgctttcacagggtgtcaagagaagctggtggga 260

                                                                       
Query: 61  gcgtggcccttgcagtgttggacatcttctttgtggggcacaggtgaaggtgttacgcct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gcgtggcccttgcagtgttggacatcttctttgtggggcacaggtgaaggtgttacacct 320

                                                                       
Query: 121 ttcattggccagttatgctcagtaagttctcagatctttagttttaacgtactcatgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattggccagttatgctcagtaagttctcagatctttagttttaacgtactcatgctc 380

                                                                       
Query: 181 atacgacacatatgcctagactactctggtgagatcataaacagtatctttttctcttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacgacacatatgcctagactactctggtgagatcataaacagtatctttttctcttta 440

                                                                       
Query: 241 gagataaggttatttatcagtctgtggttcatgtgcagtgccaaacagataggtggtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagataaggttatttatcagtctgtggttcatgtgcagtgccaaacagataggtggtggt 500

                           
Query: 301 gcctgtgtgcctcacg 316
           ||||||||||| ||||
Sbjct: 501 gcctgtgtgccccacg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)