BAC Information

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BAC

Clone NameMSMg01-178L11
Chromosome18 (Build37)
Map Location 46,860,566 - 47,019,052
singlet/doubletdoublet
Overlap geneCdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226
Downstream geneLOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178L11.T7 (MSMg01no178_l11.b1)MSMg01-178L11.TJ (MSMg01no178_l11.g1)
ACCAG372718AG372719
length733744
length of high quality
(start - end)		602 (46 - 647)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no178_l11.b1 PHD_FILE: MSMg01no178_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005CHROMAT_FILE: MSMg01no178_l11.g1 PHD_FILE: MSMg01no178_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,018,455 - 47,019,052)(46,860,566 - 46,860,846)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAATATGCTTATATATCTGTTCTAATTAAGTTAAGAAGTAGGG
ACCAGCCAGATGGATCAGTACGTTAAGATGCTAGCTGCCAAGCCAGCTGA
TCTTAGTTTGACCCCCAGGACCCAGAGGTGGAAGGGGAAACACAGTTCCC
AAAAGTTATCCCCTGAACTTCATACACACAAACACAGGCACAGCATAAGT
AAATGCAAAATTTTAAAAGAAGAAACTTCAAATAACTTAAAAGTAAAAAG
GAGCTTGTAAAACCCTGCCATGTTAAATTACAGATGTGAACCCCCATTCC
CTGGGAACTTAGAACAAGGGAAAACAGACTCAATGCTTCTGTTTCTGAAT
TCTAAAGGCATGGAACACCTGGGATGAAATATAGTAATGCATACTTGTGA
ATAAAACCTTTCTAAAGATTTTTTTTTTTGAGATAGGGTCTTTCTACATA
GCCCTGGCTGGCCTTGAACTCACAGAGCTCTGCCCACCTCTGTCCCATGA
CTCTGGGATTAATAGCACATACCACCACACATAGCTCTGAAAGGTAATTA
AAGAAGACTTACCTAAGTGGAGCAGATGGGAAGATAATGGCTGAGTAGGG
AACTAAGGAGACCCTAGCGGATACCAAGTGTTGGCCAAGAAATACAGCAT
CTAGAATTCTCTGTTACTATTGACGAAAATTGC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAACCCATGAGCATAGATTT
GGTTGTTTTGTGGTCAGTTACTCTGACCCTGAACACAATGGCATTAAACA
GCAAACTGTGGCAGCTGAGCAGAGAGGACACCTCGGGGCTACTTGGCCAT
TCCCTTTTTATTGGTCCCTTGATGCTTTTACAGGGTGTCAAGAGAAGCTG
GTGGGAGCGTGGCCCTTGCAGTGTTGGACATCTTCTTTGTGGGGCACAGG
TGAAGGTGTTACGCCTTTCATTGGCCAGTTATGCTCAGTAAGTTCTCAGA
TCTTTAGTTTTAATGTACTCACGCTCACACGACACATATGCCTAGACTAC
TCTGGTGAGATCATAACCCCCACCTTTTTCTCTTTAGAGATAAGGTTATT
TATCAGTCTGTGGTTCATGTGCAGTGCCTAACAGATAGGTGGTGGTGCCT
GTGTGCCTCCCGGAATGTGTAGCCATCCTGTCCCAGTATCTGGAATCAAT
ATGGCAACATTTTGCTATCTGTTATAATGAGTTAACTCATTGTATCTACA
CCAGTCCTGTCCGTGTACTTATTATTCTAGTCTTGTTGTACGACACACCT
GTAAATGTTATTTTGTAATAAAATTCTTCTGTCCATATTAATTATCCCCT
CCCTATAATTTTGTGTACGTCCCCCCCCATTTATCATGTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_l11.b1 MSMg01no178_l11.b1 CHROMAT_FILE:
MSMg01no178_l11.b1 PHD_FILE: MSMg01no178_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
         (602 letters)



>mm_chr18_47018430_47019431
          Length = 1002

 Score = 1110 bits (574), Expect = 0.0
 Identities = 592/598 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaatatgcttatatatctgttctaattaagttaagaagtagggaccagccag 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcaagaacatggttatatatctgttctaattaagttaagaagtagggaccagccag 564

                                                                       
Query: 65  atggatcagtacgttaagatgctagctgccaagccagctgatcttagtttgacccccagg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggatcagtaggttaagatgctagctgccaagccagctgatcttagtttgacccccagg 504

                                                                       
Query: 125 acccagaggtggaaggggaaacacagttcccaaaagttatcccctgaacttcatacacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acccagaggtggaaggggaaacacagttcccaaaagttatcccctgaacttcatacacac 444

                                                                       
Query: 185 aaacacaggcacagcataagtaaatgcaaaattttaaaagaagaaacttcaaataactta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaacacaggcacagcataagtaaatgcaaaattttaaaagaagaaacttcaaataactta 384

                                                                       
Query: 245 aaagtaaaaaggagcttgtaaaaccctgccatgttaaattacagatgtgaacccccattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagtaaaaaggagcttgtaaaaccctgccatgttaaattacagatgtgaacccccattc 324

                                                                       
Query: 305 cctgggaacttagaacaagggaaaacagactcaatgcttctgtttctgaattctaaaggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctgggaacttagaacaagggaaaacagactcaatgcttctgtttctgaattctaaaggc 264

                                                                       
Query: 365 atggaacacctgggatgaaatatagtaatgcatacttgtgaataaaacctttctaaagat 424
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atggaataattgggatgaaatatagtaatgcatacttgtgaataaaacctttctaaagat 204

                                                                       
Query: 425 ttttttttttgagatagggtctttctacatagccctggctggccttgaactcacagagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttttttttttgagatagggtctttctacatagccctggctggccttgaactcacagagct 144

                                                                       
Query: 485 ctgcccacctctgtcccatgactctgggattaatagcacataccaccacacatagctctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ctgcccacctctgtcccatgactctgggattaatagcacataccaccacacatagctctg 84

                                                                     
Query: 545 aaaggtaattaaagaagacttacctaagtggagcagatgggaagataatggctgagta 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aaaggtaattaaagaagacttacctaagtggagcagatgggaagataatggctgagta 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_l11.g1 MSMg01no178_l11.g1 CHROMAT_FILE:
MSMg01no178_l11.g1 PHD_FILE: MSMg01no178_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:34 2005
         (281 letters)



>mm_chr18_46860366_46861046
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaaacccatgagcatagatttggttgttttgtggtcagttactctgaccctgaacac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cataaaacccatgagcatagatttggttgttttgtggtcagttactatgaccctgaacac 260

                                                                       
Query: 61  aatggcattaaacagcaaactgtggcagctgagcagagaggacacctcggggctacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggcattaaacagcaaactgtggcagctgagcagagaggacacctcggggctacttgg 320

                                                                       
Query: 121 ccattccctttttattggtcccttgatgcttttacagggtgtcaagagaagctggtggga 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ccattccctttttattggtcccttgatgctttcacagggtgtcaagagaagctggtggga 380

                                                                       
Query: 181 gcgtggcccttgcagtgttggacatcttctttgtggggcacaggtgaaggtgttacgcct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gcgtggcccttgcagtgttggacatcttctttgtggggcacaggtgaaggtgttacacct 440

                                                    
Query: 241 ttcattggccagttatgctcagtaagttctcagatctttag 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcattggccagttatgctcagtaagttctcagatctttag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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