BAC Information

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BAC

Clone NameMSMg01-179L21
Chromosome18 (Build37)
Map Location 22,097,321 - 22,097,557
singlet/doubletsinglet
Overlap gene4921528I01Rik
Upstream geneRnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179L21.T7 (MSMg01no179_l21.b1)MSMg01-179L21.TJ (MSMg01no179_l21.g1)
ACCAG373427AG373428
length727729
length of high quality
(start - end)
---239 (121 - 359)
definitionCHROMAT_FILE: MSMg01no179_l21.b1 PHD_FILE: MSMg01no179_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:49 2005CHROMAT_FILE: MSMg01no179_l21.g1 PHD_FILE: MSMg01no179_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAATTCTTT
GTTTAGCTCCGTAACCCATTTTTACTAAGGTTATTTGATTCTCTGTATAC
TAACTTCCTAACGTCTTTGTATATATTGTATATTAGCCGCTCTATCTTAT
ATAGGATTGAGAAGGATTTTTTCGCAATCTGTTAGTCGCCATTTTGTCCT
ATTACCAGTATCCTTTGGCTTACTAGGTTATGCCTGATGAAAATGCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
ACTTTCCCTCTACCTTTATCATACTGACCAAATTAACCATGTATTCAATT
ACTTATTTATTCACTTCATTCGTTTACTCATTCCATCAATCCTTATTTTC
TCTGGGGTACCTTGGCGGCGCTGGAACTCCTTCTGTAGAGCAGGCTAGAC
TCTTTCTCAGAGATCTGACTGACTCTGTGTCTACCTATCGAGCGCTGCCC
TCGGTATCATGTGGCTACATTGTGAGTACGCATCTGTGCTACTTATTGAC
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXX
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTATCATCACTATGTCCAAGAAGTACTGTCATTT
GACTTGCCAATTTCGCCCCAATTCTTAATTCCTACTTGACACATTTAATA
ATTTCTTACAGATTATATTTCCCAGAAATTTGAATCAAACATGCTGAGAA
AATGTACATTAAAATTAAAGACATTTCTGGCTAGACTGTCTTGGCAACTT
CATTTCTCTTCTGTTTTCATTAGCATATGTGTGTGAGTGCACACGGATGC
CAGCATGTGCCAATGTGCCCACTGGCAGAGATGTGAGAGAACAACCTGTG
CTGAGAGTATTTTAGCCTGCCCGCCACGCTTACACTGCAGGTACATTTAC
CTTCTGAGCCATCCCAGGTTCTCTTTCCATTTTCTATGAGATGAGTGGAT
AATTTTGAAATCATTGACTCAGGATACAGGAAAGGAATCATAGGCATGAG
ATAGAGCATGGTGCTCATGGCACTACATTTCTGCTAATCCTAACAAAAGT
AGATCCAACCCAGAATGTCACAACCTGATGTCAAGAACACTCAGCATCCG
AGTCTCTACATCTCTACCTTATGCAACCCCTGGATGATGCACAACTTGTA
GAACTATCCCATCTTTACTAAGTAAGAACAATGTGTACCATGACCTTCTG
CTCTTTAGACTTTTGAGAGTGATAACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_l21.g1 MSMg01no179_l21.g1 CHROMAT_FILE:
MSMg01no179_l21.g1 PHD_FILE: MSMg01no179_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:50 2005
         (239 letters)



>mm_chr18_22097121_22097759
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttaattcctacttgacacatttaataatttcttacagattatatttcccagaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttaattcctacttgacacatttaataatttcttacagattatatttcccagaaatt 260

                                                                       
Query: 61  tgaatcaaacatgctgagaaaatgtacattaaaattaaagacatttctggctagactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgaatcaaacatgctgagaaaatgtacattaaaattaaagacatttctggccagactgtc 320

                                                                       
Query: 121 ttggcaacttcatttctcttctgttttcattagcatatgtgtgtgagtgcacacggatgc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggcgacttcatttctcttctgttttcattagcatatgtgtgtgagtgcacacggatgc 380

                                                                    
Query: 181 cagcatgtgccaatgtgcccactggcagagatgtgagagaacaacctgtgctgagag 237
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 cagcatgtgccaatgtgcccactggaagagatgtgagagaacaacctgtgctgagag 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)