BAC Information

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BAC

Clone NameMSMg01-180G13
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,869
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180G13.T7 (MSMg01no180_g13.b1)MSMg01-180G13.TJ (MSMg01no180_g13.g1)
ACCAG373896
length704788
length of high quality
(start - end)
---233 (125 - 357)
definitionCHROMAT_FILE: MSMg01no180_g13.b1 PHD_FILE: MSMg01no180_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:38 2005CHROMAT_FILE: MSMg01no180_g13.g1 PHD_FILE: MSMg01no180_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXX
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCC
ACATTTGCTCTGGCTCTGGCACTCGACTGAACCAAACAATTAGGCTCATA
CCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAA
GAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTC
AGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTG
GAATTTCTACTTCATGTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCT
GTATAGTTTAGGTCCGTCCCGGNACATTGCCCTTTTATAACAGACTTTGN
TGTGTGTGTGTGTTGTGCCCCCCCAAAAAAAAAAAAAAAAACTCCTCGGG
GGTGGGGGTTTCGCTGCTCTTCATCTTGCCTCTTATGGCTCGACTCCACG
ACATTTCCTCTTATCCTAATTTCTTTCTACCATTGTTTTACATCTTTTCC
CCTCCTCCTCTTCACCCTTCCACTTTTACATTCTTTCTCTCTTACCCCCC
CCCTCCTTTTTTTTATGTCCTTCTCCTCGTCCTCTTTTATTCTTTTTCTT
ACCCTATCCACTACTGTCATTTCCTACTTTTCATTACCCTTCCCTTTCCT
CTTTACCCAATCCATCCCCCTTCTCTCTCTCTTCCCTCACTTTATTATTT
CACTCTCGTTTTTTACTTACCTCCCCCTCAGTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_g13.g1 MSMg01no180_g13.g1 CHROMAT_FILE:
MSMg01no180_g13.g1 PHD_FILE: MSMg01no180_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:38 2005
         (233 letters)



>mm_chr18_40467476_40468107
          Length = 632

 Score =  277 bits (143), Expect = 5e-79
 Identities = 182/195 (93%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactgaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataa 60
           ||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||
Sbjct: 394 gactgaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaa 336

                                                                       
Query: 61  cacaccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcac 120
           ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||| |
Sbjct: 335 cacactctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgc 276

                                                                       
Query: 121 cctgtcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaat 180
           |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 275 cctgccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaat 216

                          
Query: 181 ttctacttcatgttt 195
           |||||||||||||||
Sbjct: 215 ttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)