BAC Information

Click to search

BAC

Clone NameMSMg01-180I08
Chromosome18 (Build37)
Map Location 51,523,328 - 51,523,613
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180I08.T7 (MSMg01no180_i08.b1)MSMg01-180I08.TJ (MSMg01no180_i08.g1)
ACCAG373978AG373979
length801726
length of high quality
(start - end)
285 (41 - 325)574 (72 - 645)
definitionCHROMAT_FILE: MSMg01no180_i08.b1 PHD_FILE: MSMg01no180_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:47 2005CHROMAT_FILE: MSMg01no180_i08.g1 PHD_FILE: MSMg01no180_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAAGTTGTTTCACCTTTTTTTTTTTTAACCTCATTGGAGTATGGAGTCTT
AGCAATTACCCTAAGGCATGCCCCTTTTTCTAATTAGTTCATTAATTTAT
AATACAAGGTAAGTAACTAGATAGGATTTCTTATTTAAAACCCTCAGAGT
ATGATTGATATAGACATGTCAAGCTATATATAGGTGATTTAACTGAAAGT
AAATAAGTATCTCCAGATTGTCTGTGAGTATATATGTATATGTTTATATG
TGTATATGTATATGTGTTTATATGTGTANANTNNNNNNNNNNCNNNTNNN
NCTNTNNTTTTTTTTTTTTCCCCCCCCCCCCCCTCTTTTTTTTTCCCCTC
CCTTTCCTCTTTTGTTCCCCCCCCCCTGCTAATAAAAAATAAATCTCTTT
TCTCCGTTTTTTCCCCACCCCCTTTTACTATTTATTTTTATTACCCACTC
TCCCTATCTCCATTTTTTCTCCCTTCTCTCTTTTTTTATTTATCTTATTT
CTACCATTTTTATCTCCACTACTCCCTCTACCTTTACTCCCTTTATTTCT
ATCCCCATTACTCACCATTATCTTTTAACTCTTTCTTCTACTCCCTCACT
TTATAATTTATTAACCACTCTTTACCACCATACACCTCTTATCCATCTCT
TTATTTATTCCCCTTCCTCCCCTTTCTTTTTTTTTCCCCCACTTCCCATT
CTTCTTTCCCTCTTCCCCCTTTTCCCCCATCTCTTCCCCCCTATCCCCTT
N
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATCA
AAAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCCAACCTAGGATACCCAAGATATAAGATACNATTTGCT
AAACACATGAAACTCAAGAAGAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_i08.b1 MSMg01no180_i08.b1 CHROMAT_FILE:
MSMg01no180_i08.b1 PHD_FILE: MSMg01no180_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:47 2005
         (285 letters)



>mm_chr18_51523129_51523813
          Length = 685

 Score =  472 bits (244), Expect = e-137
 Identities = 274/286 (95%), Gaps = 4/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagttgtttcacctttttttttttt----aacctcattggagtatggagtct 59
           |||||||||||||||||||  ||||||||||||    |||||||||||||||||||||||
Sbjct: 200 ggaattcaaagttgtttcagtttttttttttttttttaacctcattggagtatggagtct 259

                                                                       
Query: 60  tagcaattaccctaaggcatgcccctttttctaattagttcattaatttataatacaagg 119
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagcaattaccctaaggcatgttcctttttctaattagttcattaatttataatacaagg 319

                                                                       
Query: 120 taagtaactagataggatttcttatttaaaaccctcagagtatgattgatatagacatgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taagtaactagataggatttcttatttaaaaccctcagagtatgattgatatagacatgt 379

                                                                       
Query: 180 caagctatatataggtgatttaactgaaagtaaataagtatctccagattgtctgtgagt 239
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagctatatgtaggtgatttaactgaaagtaaataagtatctccagattgtctgtgagt 439

                                                         
Query: 240 atatatgtatatgtttatatgtgtatatgtatatgtgtttatatgt 285
           |||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 440 atatatgtatatgtttatatgtttatatgtttatatgtttatatgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)