BAC Information

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BAC

Clone NameMSMg01-181B24
Chromosome18 (Build37)
Map Location 20,019,400 - 20,019,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181B24.T7 (MSMg01no181_b24.b1)MSMg01-181B24.TJ (MSMg01no181_b24.g1)
ACCAG374398AG374399
length742747
length of high quality
(start - end)		484 (75 - 558)373 (44 - 416)
definitionCHROMAT_FILE: MSMg01no181_b24.b1 PHD_FILE: MSMg01no181_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005CHROMAT_FILE: MSMg01no181_b24.g1 PHD_FILE: MSMg01no181_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCACTGCTAAGTACTGCTCAGTGTT
AGCAATATGTAGCTGTCTTAATTTCATCCAGATTTTTTTTCTTGGTAGAG
CTTGCACTTTAAAGAATCTTGCAACCTCCTAGCCTGCTGACTCCTCCCAT
ATATGGTCCCTGTTTGCTTCCTGTGCTGACATTATTTATTCAGTTACAGA
ACTTTCAAGTTCAATTTCAATAAGATTTTGTTGATAAAATTTTATTGAGC
ACAGTTGGCTGGTAAATAATACATGTGTTCAGTCTGCCACTTTTTCCAAA
GGTCTGAAGATACCTTTATAAGTAGACAAATAACTGCATTTTGGAAAGAA
AATGGAGCCCAAGTCTGACCCCATTAAACGTTTAGGTTATTTTCATCTTA
AGAAAATTTATTTCACTGAAGTGTTCTGACTTAAAATTTAAACGGTGTCA
TATGTTAAAGTGCTTAGTATTTTAAGTGAAGTATGGTGGAAACTGTGTGA
ATGTCTGCAAGTGTATGAGTACCAAGAAGGTCTGAAGCATTCAGATTCTT
ATGACATCCTGATCTTATGATGACTGACCTCGCACAATCTTCTATCTGTG
ACTATACTCATATGCACTACTATCTACTTTTTTGAATACCACTTGCCCCA
CCATTTTGCCACCTTTATTAATTATTATACAATTGTCAATAG

TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGGCACGGATCTAGCGCTGATCCAATTTAGCCCATACCAACCTTCT
CCTCTAAGAATTTTAATTCTTTTCTTCTTCCATGGAGCTCCAAACCAGCA
GTACTTCTTACAAATGCCTTCTGCTTTTCTCAGGCCGTACGTTGGGCACC
AAATTGTTGAGGCTGGCTAGCGGTTCACATGTCCGGCTTCGAACCTGGAA
GGCATCTTGGAATCTGGGAGAGAGGAAAACTAGGCGACGAGAGAAAGATG
GAACCAAGACAGGGTTCTGATCAAGGTTCAAATTTTTAATGGTGGACGTG
CTTTATAAAAGAGGGGGGGGGGTCCATTCCCGCCGATTCATCCTTGGAGC
CTGGAACCAGCTGCCCCCGCTGTTATGCAGAATAGGGCATAGTTCCCAGA
ATAGCTCTGGAGGGCCTCACAGCAGGTAGCAGTATCTTGAATAGGAACAG
CAGTAGCGGCAGAACAATAGAGTGACCTATGTAGTAAGGTTCCACCCTAG
ATAATCTTTCTTAGTGAAATCCACGTCCAGTTTTGTTCAAACCAAATATA
CGCTTATGGCACTCTACTCTCAATCATCTTTTTCTATTTTTTTTTACACT
ATACTTTACTAATTTCCCACCCCACTCCCTTTTTTTTTTTATTTTTTACC
ACCTATTTTTATTTTTTACATCCCCTAATAACTACCCAAGAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_b24.b1 MSMg01no181_b24.b1 CHROMAT_FILE:
MSMg01no181_b24.b1 PHD_FILE: MSMg01no181_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:32 2005
         (484 letters)



>mm_chr18_20019200_20020083
          Length = 884

 Score =  872 bits (451), Expect = 0.0
 Identities = 475/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcactgctaagtactgctcagtgttagcaatatgtagctgtcttaatttcatccagatt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agcactgctgagtactgctcagtgttagcaatatgtagctgtcttaatttcatccagatt 624

                                                                       
Query: 61  ttttttcttggtagagcttgcactttaaagaatcttgcaacctcctagcctgctgactcc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttttcttggtacagcttgcactttaaagaatcttgcaacctcctagcctgctgactcc 564

                                                                       
Query: 121 tcccatatatggtccctgtttgcttcctgtgctgacattatttattcagttacagaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcccatatatggtccctgtttgcttcctgtgctgacattatttattcagttacagaactt 504

                                                                       
Query: 181 tcaagttcaatttcaataagattttgttgataaaattttattgagcacagttggctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 tcaagttcaatttcaataagattttgttgataaaattttattgagtacagttggctggta 444

                                                                       
Query: 241 aataatacatgtgttcagtctgccactttttccaaaggtctgaagatacctttataagta 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aataatacatgtgttcagtttgccactttttccaaaggtctgaagatacctttataagta 384

                                                                       
Query: 301 gacaaataactgcattttggaaagaaaatggagcccaagtctgaccccattaaacgttta 360
           |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||
Sbjct: 383 gacaaataactgcattttgggaagaaaatggagcccaagtctgaagccattaaacgttta 324

                                                                       
Query: 361 ggttattttcatcttaagaaaatttatttcactgaagtgttctgacttaaaatttaaacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggttattttcatcttaagaaaatttatttcactgaagtgttctgacttaaaatttaaacg 264

                                                                       
Query: 421 gtgtcatatgttaaagtgcttagtattttaagtgaagtatggtggaaactgtgtgaatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 gtgtcatatgttaaagtgcttagtattttaagtgaagtatggtggaaactgtgtgaaagt 204

              
Query: 481 ctg 483
           |||
Sbjct: 203 ctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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