Query= MSMg01no181_m14.b1 MSMg01no181_m14.b1 CHROMAT_FILE:
MSMg01no181_m14.b1 PHD_FILE: MSMg01no181_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:20 2005
(684 letters)
>mm_chr18_68654103_68655189
Length = 1087
Score = 1220 bits (631), Expect = 0.0
Identities = 664/677 (98%), Gaps = 5/677 (0%)
Strand = Plus / Minus
Query: 6 ggaattctatttgcactccagtcgatccccatgataagcacctcccccactccctacaca 65
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 979 ggaattctatttgcacttgagtcgatccccatgataagcacctcccccactccct--aca 922
Query: 66 cacacacacacacacacacacacacacacacacacacacttctccttaagacactggctt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cacacacacacacacacacacacacacacacacacacacttctccttaagacactggctt 862
Query: 126 aaatggtgggctattttcttctagaaaagtccctcactgtgtcatcctatctgtccagct 185
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 861 aaatggtgggctattttcttctagaaaagtccttcactgtgtcatcctatctgcccagct 802
Query: 186 tcaccccatctcccaaaattacttcaactggtagaactctatgtctcaggatgaatattc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaccccatctcccaaaattacttcaactggtagaactctatgtctcaggatgaatattc 742
Query: 246 tccaactcctttctatagccctctgcgccatcgctcctttctccggtctcatttgatcaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaactcctttctatagccctctgcgccatcgctcctttctccggtctcatttgatcaa 682
Query: 306 agctccctgtgaagacttggagacctcataactgacaagttcgt---gtcgatctgcaaa 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 agctccctgtgaagacttggagacctcataactgacaagttcgtgtcgtcgatctgcaaa 622
Query: 363 ggaaagaaggttgggatggcctaaactgagggctcctgagccgactccaactgatacagc 422
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ggaaagaaggttgggatggcctaaactgatggctcctgagccgactccaactgatacagc 562
Query: 423 tctgattgctcaaacagggtgactccggctctgtagctgatcacattttctccaagtttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgattgctcaaacagggtgactccggctctgtagctgatcacattttctccaagtttc 502
Query: 483 tactatgttacttaaagttaatacacaatgagtatttaatacaaaacccacaaaggaaat 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 501 tactatgttacttaaagttaatacacaatgagtatttaatacaaaaccctcaaagaaaat 442
Query: 543 agctacctgcctgagttaactacaaaatcagcaaaaacttggaagtttctgtacgtgagg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agctacctgcctgagttaactacaaaatcagcaaaaacttggaagtttctgtacgcgagg 382
Query: 603 ctatggcatttaagcgggctcttactgccatctagtggtcataactggaagcacctccca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatggcatttaagcgggctcttactgccatctagtggtcataactggaagcacctccca 322
Query: 663 tagtcaaaatctgcagc 679
|||||||||||||||||
Sbjct: 321 tagtcaaaatctgcagc 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1087
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1077
Effective search space: 725898
Effective search space used: 725898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_m14.g1 MSMg01no181_m14.g1 CHROMAT_FILE:
MSMg01no181_m14.g1 PHD_FILE: MSMg01no181_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:20 2005
(284 letters)
>mm_chr18_68499624_68500308
Length = 685
Score = 462 bits (239), Expect = e-135
Identities = 277/299 (92%), Gaps = 16/299 (5%)
Strand = Plus / Plus
Query: 1 cattattttttatttttttactacagctcccctatcctagacttctggccctatggcttg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cattattttttatttttttactacagttcccctatcctagacttctggccctatggcttg 260
Query: 61 cattaagaattgtct-ggggggaccaaccttaactacttaaactcctgtccttcatagtt 119
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cattcagaattgtctgggggggaccaactttaactacttaaactcctgtccttcatagtt 320
Query: 120 ttggacttactcagacatagaacttctatgctaaacaccttgcttcgtgttttgtgaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggacttactcagacatagaacttctatgctaaacaccttgcttcgtgttttgtgaaaa 380
Query: 180 cctccatgcctctctctgtctttttttttt---------------gactcaattcagtgt 224
|||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 381 cctccatgcctctcgctgtctttttttttttttttttttttttttgactcaattcagtgt 440
Query: 225 ttccaagaaatttgggggcggtcacttgtcgactctaggtacaaactcgccctcactcc 283
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 441 ttccaagaaatttgggggcggtcacatggcgactctaggtacaaactcgccctcactcc 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space: 185900
Effective search space used: 185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
