Query= MSMg01no181_n09.b1 MSMg01no181_n09.b1 CHROMAT_FILE:
MSMg01no181_n09.b1 PHD_FILE: MSMg01no181_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
(567 letters)
>mm_chr18_73432484_73433450
Length = 967
Score = 920 bits (476), Expect = 0.0
Identities = 535/566 (94%), Gaps = 20/566 (3%)
Strand = Plus / Plus
Query: 4 ggaattctgtgaagtccc--ggcttcctttcctttctgcatgtaataaataaaaattact 61
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 220 ggaattctgtgaagt---agggcttcctttgctttctgcatgtaataaataaaaattac- 275
Query: 62 ggatttgagaaggccaattcaaatatagcagtctctactagagtaggagacagtctctat 121
|||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 276 --------------caattcaaatgcaccagtctctactagagtaggagacagtctctat 321
Query: 122 tagttaataaagagtaagagacaaatgcaataccttaagcccttcttactacatcccgtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagttaataaagagtaagagacaaatgcaataccttaagcccttcttactacatcccgtt 381
Query: 182 gctatttcattctgatataaacattattcttcacccctcatgtgtcagaaaatagctaaa 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 gctatttcattctgacataaacattattcttcacccctcttgtgtcagaaaatagctaaa 441
Query: 242 aataatgtctggaatgacactcatacacttaatgctcctggagaaaatttctagttcaca 301
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aataatatctgggatgacactcatacacttaatgctcctggagaaaatttctagttcaca 501
Query: 302 tgtgaaaatctcagagatgtcccttgacatgacatagattacctgtccattgccggatca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 tgtgaaaatctcagagatgtcccttgacatgacatagattacctgtccattgctggatca 561
Query: 362 accatgctcaaggaagttctgccgtttgtccatatatggatcatatacctaatcctataa 421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 accatgctcaaggaagttctgccgtttgtccatatatggatcacatacctaatcctataa 621
Query: 422 tcaataaaacaggtcgtaaggacggcatcaccagaattccgtttctataatggatcagca 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 tcaataaaacaggtcgtaaggacggcatcaccagaattccgtttctaaaatggatcagca 681
Query: 482 tcctacaggagatggtgaatgctaggcagacaggaagtagacagcgactactgtagcatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcctacaggagatggtgaatgctaggcagacaggaagtagacagcgactactgtagcatg 741
Query: 542 gagcgacagtggtaaaagatgctgtg 567
||||||||||||||||||||||||||
Sbjct: 742 gagcgacagtggtaaaagatgctgtg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_n09.g1 MSMg01no181_n09.g1 CHROMAT_FILE:
MSMg01no181_n09.g1 PHD_FILE: MSMg01no181_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
(234 letters)
>mm_chr18_73570576_73571213
Length = 638
Score = 391 bits (202), Expect = e-113
Identities = 226/240 (94%), Gaps = 12/240 (5%)
Strand = Plus / Minus
Query: 1 tctctcaatcttctctctgaatataacaattattaacggttcatattttcttcactattt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 tctctcaatcttctctctgaatataacaattattaacagttcatattttcttcactattt 377
Query: 61 ctaaccacataatttaaaaattgttctactttctcttaatacatcaccttgcatcttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctaaccacataatttaaaaattgttctactttctcttaatacatcaccttgcatcttcag 317
Query: 121 atgtatggcaacagtctcttaataccatcaaaaacctgtccttactgaagttc-tttttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 316 atgtatggcaacagtctcttaataccatcaaaaacctgtccttactgaagttcttttttt 257
Query: 180 cctaaaaatgtatttgtgtgtgtgtgtagtg-------ttttttttttaaagctaggata 232
|||||||||||||| ||||||||||||| |||||||||| |||||||||||
Sbjct: 256 cctaaaaatgtatt----tgtgtgtgtagtgtttcttttttttttttttaagctaggata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 638
Length adjustment: 9
Effective length of query: 225
Effective length of database: 629
Effective search space: 141525
Effective search space used: 141525
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
