BAC Information

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BAC

Clone NameMSMg01-182L24
Chromosome18 (Build37)
Map Location 33,314,575 - 33,314,757
singlet/doubletsinglet
Overlap geneCamk4
Upstream geneMap3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
Downstream geneStard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182L24.T7 (MSMg01no182_l24.b1)MSMg01-182L24.TJ (MSMg01no182_l24.g1)
ACCAG375543AG375544
length816720
length of high quality
(start - end)
184 (109 - 292)317 (41 - 357)
definitionCHROMAT_FILE: MSMg01no182_l24.b1 PHD_FILE: MSMg01no182_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:35 2005CHROMAT_FILE: MSMg01no182_l24.g1 PHD_FILE: MSMg01no182_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGGGAAGCTGGATCAGCTAGTCTGGAGCAGGCAAAATGA
TCTAGAGACCTCTCAAACCAAGTCAACGATGGGTCTGAGATGGTCCTTTG
ACCTCCAAATACATCCCATGACAAAGGTGTGTGTGAGTATGCGTGAGCCC
GCCCACTCACCAATACCCAAACTGCCACACACAGAGATAGAGCCAGAGAC
ACAGAGAGGGAGGGAGGGAGAAGAAGAAGGAATTGATTGACCCTGCTATG
TTTTTTTTCTCACCCTTTCTTCCTTCGTTCGTCTTTCCTTGCCTTTTTTT
CTTTTTCCTCTATCTTTACTTTCGTTCCTTTTTTTTTTTACCCCTTCTTC
TCCCCCCTTTCCCCCTATTTTCTCCTTTTCTACGTATCCTTTCCTTTTGT
TTCCGTGTCCTTCTCTCCCTCCTTCCTCCTCTTTCTCTCCTTTTTCCCTC
TTCACTCCTTTTCTCTCTTTTCCTCATCCTTTTCCCCCCTTCCCGTCTTT
TCTCCCTTCCTCTATTTTTTTCCCATTTCCACCCCTTTTCTCCTCTTGTT
TATTATTTTCCCCCTTCCCCCTTTTCCCTTTCTCTTTTCCCTCTCCTTTA
CTCCTCTTTCTTATCACCCTCTCCTTTTTCTCCCCCTCTTTTCTTTTTCT
TCATACCTCATCTCCCTCTTGTTCCCACTTCTTTTTCTCTCCCCCTCGCT
ATCTTTTTTTTCCCTTTCTTCCCTCCCTTCCTTTATTTTCTTACCCCTTT
CCCCCACCTCTCTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTGTTTTTAATTGCTGAGTAGGACTCCATTGTGTAAATGTACCACATTT
TCTGTATCCATTCCTCTGCCGAGGGGCATCTGGGTTCTTTCCAGCTTCTG
GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATT
ACAAGTTGGAACATCTTCCGGGTATATGCCCAGGAGAGGTATTGCTGGAT
CTTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATTTC
CAGAGTGGTTGTACCAGCTTGTAATCCCACCAGCAATGGAGGGGTGTTCC
TCTTTCTTTTTTCCTCCCNACCATCCGCTTTCTTAGCCATTCTGACTGGT
GTGAAGTGAAACCCCAGGGTTGTTTTGATTCACATTTCCCAGTTGATTAA
GGATGTTGAACATTTTTTCATGTGCTTCTCAGCCATTCGGTATTCCTCAG
TTGAGAATTTTTTATTTAGCTCTGTACCCCATTTTTTAAATAGGGTTATT
TGACTTTTCTGGAGTCCCGCTTCTTGAGATCCTTGTATATTTGTACATCA
TTCCCCCGATGTTTTATCACCCCTATTTATTTTTTCTCACCATGCTTGAG
TACTTATTGTTATACAGAACAGCGACCTCTGCCCTCAAAAAAACAATTTA
TTTTCTTTTTTTTTATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_l24.b1 MSMg01no182_l24.b1 CHROMAT_FILE:
MSMg01no182_l24.b1 PHD_FILE: MSMg01no182_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:35 2005
         (184 letters)



>mm_chr18_33314375_33314958
          Length = 584

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctcaaaccaagtcaacgatgggtctgagatggtcctttgacctccaaatacatccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctctcaaaccaagtcaacgatgggtctgagatggtcctttgacctccaaatacatccca 324

                                                                       
Query: 61  tgacaaaggtgtgtgtgagtatgcgtgagcccgcccactcaccaatacccaaactgccac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgacaaaggtgtgtgtgagtatgtgtgagcccgcccactcaccaatacccaaactgccac 264

                                                                       
Query: 121 acacagagatagagccagagacacagagagggagggagggagaagaagaaggaattgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acacagagatagagccagagacacagagagggagggagggagaagaagaaggaattgatt 204

              
Query: 181 gac 183
           |||
Sbjct: 203 gac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)