BAC Information

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BAC

Clone NameMSMg01-183H03
Chromosome18 (Build37)
Map Location 31,396,392 - 31,575,894
singlet/doubletdoublet
Overlap geneRit2, EG666130
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneSyt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183H03.T7 (MSMg01no183_h03.b1)MSMg01-183H03.TJ (MSMg01no183_h03.g1)
ACCAG376031AG376032
length724733
length of high quality
(start - end)		318 (45 - 362)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no183_h03.b1 PHD_FILE: MSMg01no183_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:28 2005CHROMAT_FILE: MSMg01no183_h03.g1 PHD_FILE: MSMg01no183_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,396,392 - 31,396,705)(31,575,609 - 31,575,894)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACTGAGAACATCAAATGTCCATTTCATCTTGAGTAGTGTGTCAAG
CAATTGCTCCTTTATTATCTCTCAGAACCATCAAGAGAGGTAACGGTATT
GCCTCCTCATAGATGAGAAAGATCAGAGATACGTACCAACATGATTGAAG
TTGATGAATAATAAATACTTTTGCCACTCAATTATCCAAAATCTTGGCCC
ACCTTCTGTGAACTAGAAACTGATCTGGACCTATGCATATTTAGTTATAA
ATTCAGCCATTGTGTTGCATTCAGTCAAATACTAAGTAAGACACATATTA
TAAGAAACAAATATTATATATTATAAGACAATACTGCATATTATAAGAAA
CATTGCAATAAGTCAGGCACAAGAAGGCAAATGCTACATATACTCTCTCA
CTTGTAGAACATATAAAAATTTATATATGAATATATACATGTACATATGC
ATATAGACACACATCTCTGAGAAGCAGATGAATGTTATCAAGAGTTATGA
TGGTTACTGTAAGCATAGTTGAAATGACACATTTAAACCTTGAATCAAAT
ATTTGAAGAAATAATGAGGTCAGCTCTAAACACTGGAGTGTTTTCCCAGA
AAAAGGTGGTCGATGCAAGTGTGCCAAGATGAGCAAGCACCTGGCACACT
CCAGGAGCCTTGAGGCCAGTGAGG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTTCATCCTGAATGGAATCATTT
ATATTTCCATCTGTACTTTCCACTGAACTACCCACAGATGATCTAGAGAG
GCAGAAGACACCATTACATAACCATGACTGTTACCTATAGCTACATGGGC
TAATGAAGAGCTATGGGCATAAAACCATTCATTTCCTGTATGAGAGCCAC
AGTTCTCCCTTATACATTGGAAGTTCTATGCACTAACAAAAAAAGGACAA
GGGTTTATGTTAGTTTTATTTTTTAAATTTTTTTATTGGGTATTTTCCTC
ATTTACATTTCTAATGCTATCCCACAAGTCCCCCATACCCTCCCCCCCCA
CTACTCCCCTACCCACCCACTCCCATTTCTTGGCGCTGGCGTTCCCCTGT
ACTGAGGCATATAAAGTTTGCAGGACCAATGGGCCTCTCCACTGAAAGCC
AACTAGGCCATTTTCTGCTACATATGCAGCTAGAGACATGAGCTCCAGGG
GGTACTGGTAAGCTCATATTGTTGTTTCACCTATAGGGTTGCAGATCCCT
TTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCCATGGGGTCCCTCCGATC
CATCCAATAGCTGATTGTAAGCATCCACTTCTGTGGCTGCTAAGGCCCGG
CCGAATCTCACAAGAGACAGCTATATCCAGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_h03.b1 MSMg01no183_h03.b1 CHROMAT_FILE:
MSMg01no183_h03.b1 PHD_FILE: MSMg01no183_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
         (318 letters)



>mm_chr18_31396188_31396905
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactgagaacatcaaatgtccatttcatcttgagtagtgtgtcaagcaattgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactgagaacatcaaatgtccatttcatcttgagtagtgtgtcaagcaattgct 264

                                                                       
Query: 65  cctttattatctctcagaaccatcaagagaggtaacggtattgcctcctcatagatgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttattatctctcagaaccatcaagagaggtaacggtattgcctcctcatagatgaga 324

                                                                       
Query: 125 aagatcagagatacgtaccaacatgattgaagttgatgaataataaatacttttgccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatcagagatacgtaccaacatgattgaagttgatgaataataaatacttttgccact 384

                                                                       
Query: 185 caattatccaaaatcttggcccaccttctgtgaactagaaactgatctggacctatgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caattatccaaaatcttggcccaccttctgtgaactagaaactgatctggacctatgcat 444

                                                                       
Query: 245 atttagttataaattcagccattgtgttgcattcagtcaaatactaagtaagacacatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttagttataaattcagccattgtgttgcattcagtcaaatactaagtaagacacatat 504

                         
Query: 305 tataagaaacaaat 318
           ||||||||||||||
Sbjct: 505 tataagaaacaaat 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_h03.g1 MSMg01no183_h03.g1 CHROMAT_FILE:
MSMg01no183_h03.g1 PHD_FILE: MSMg01no183_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
         (286 letters)



>mm_chr18_31575455_31576140
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttcatcctgaatggaatcatttatatttccatctgtactttccactgaactacccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatttcatcctgaatggaatcatttatatttccatctgtactttccactgaactacccac 381

                                                                       
Query: 61  agatgatctagagaggcagaagacaccattacataaccatgactgttacctatagctaca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatgatctaaagaggcagaagacaccattacataaccatgactgttacctatagctaca 321

                                                                       
Query: 121 tgggctaatgaagagctatgggcataaaaccattcatttcctgtatgagagccacagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggctaatgaagagctatgggcataaaaccattcatttcctgtatgagagccacagttc 261

                                                                       
Query: 181 tcccttatacattggaagttctatgcactaacaaaaaaaggacaagggtttatgttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 tcccttatacattggaagttctatgcactaacaaaaaaaggacaagggtgtatgttagtt 201

                                                         
Query: 241 ttattttttaaatttttttattgggtattttcctcatttacatttc 286
           ||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 200 ttatttttttaatttttttattgggtattgtcctcatttatatttc 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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