Query= MSMg01no183_j07.b1 MSMg01no183_j07.b1 CHROMAT_FILE:
MSMg01no183_j07.b1 PHD_FILE: MSMg01no183_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:38 2005
(613 letters)
>mm_chr18_49735748_49736761
Length = 1014
Score = 1094 bits (566), Expect = 0.0
Identities = 599/610 (98%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 5 gaattcattatctaactctacagaaagaaaactgcctcagagttgtatttgcatgtaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaattcattatctaactctacagaaagaaaactgcctcagagttgtatttgcatgtaaag 604
Query: 65 ggtgagtgcccacatgtccagctagagtggccgaggtcacagaagaaacaaaggatacag 124
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggtgagtgcccatatgtgcagctagagtggccgaggtcacagaagaaacaaaggatacag 544
Query: 125 ggaacagcgtttcaagtgttctctgcttgacagcctcctacttcttcc-ttttttctggg 183
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 ggaacagcgtttcaagtggtctctgcttgacagcctcctacttcttcctttttttctggg 484
Query: 184 tcagagtggcttcggggacacagtgctcaatgggctgagagagaggcttatggagctctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 tcagagtggcttcggggacacagtgctcaatgggctgagagagaggcttatggagttctt 424
Query: 244 tgcttacacaaactcacttgcataagtcctggttgtttagctacaggaagcgtagtgtca 303
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgcttacacaaacaaacttgcgtaagtcctggttgtttagctacaggaagcgtagtgtca 364
Query: 304 tctttgatctcttcctgcttcagagaggcatacgctaatatcagcctgaaggggtatgtc 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 363 tctttgatctcttcctgcttcagagaggcatacgctaatatcaacctgaaggggtatgtc 304
Query: 364 ctcttagggccatttcctatttcatggcattcctctcagtatgtggaaaaggatcagact 423
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcttaaggccatttcctattccatggcattcctctcagtatgtggaaaaggatcagact 244
Query: 424 tgagacttgaattcttcaccgagtgatttggtttcactttatataactgcagcttgctga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgagacttgaattcttcaccgagtgatttggtttcactttatataactgcagcttgctga 184
Query: 484 atccacttagtgttgctggcgtgtctatgtttccagggctggtcaccagctattggataa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atccacttagtgttgctggcgtgtctatgtttccagggctggtcaccagctattggataa 124
Query: 544 ctatttggggtcttcatctcttgggaagactacttactttctctcttcacagttgttact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctatttggggtcttcatctcttgggaagactacttactttctctcttcacagttgttact 64
Query: 604 tgactttagt 613
||||||||||
Sbjct: 63 tgactttagt 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space: 605412
Effective search space used: 605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_j07.g1 MSMg01no183_j07.g1 CHROMAT_FILE:
MSMg01no183_j07.g1 PHD_FILE: MSMg01no183_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:38 2005
(656 letters)
>mm_chr18_49569641_49570696
Length = 1056
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%)
Strand = Plus / Plus
Query: 1 agaaacaggcagtaaagaaagtaatttaaaacagtttccacgttggggaatctttaaggg 60
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaacaggcggtcaagaaagtaatttaaaacagtttccacgttggggaatctttaaggg 260
Query: 61 aggttcttattggaaagaaaaagaaaagtaaaaacagttaaaatttagaatgcttggctt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggttcttaatggaaagaaaaagaaaagtaaaaacagttaaaatttagaatgcttggctt 320
Query: 121 catcctgattgccaggttttgcaattgtttattgaactgggtagcatgaaagaaaggcag 180
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 321 catcctgattgccaggttttgcaattgtttattgaactgggtagcctgaaaaaaaggcag 380
Query: 181 acagtcagagagtgtctggaagtgagttgggactggaatcttgggggaaaaggtgaaacc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 acagtcagagagtgtctggaagtgagttgggactggagtcttgggggaaaaggtgaaacc 440
Query: 241 agtgtgattgatttaacatagcaggtcctggcaattacagggtagcaagaaacactgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 agtgtgattgatttaacatagcaggtcctggcaattacagggtagcaaggaacactgtct 500
Query: 301 tcatgcaacagaatgcccccaccctcccaggaatggttggcagtctccttcatgatgcct 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tcatgcaacagaatgcccccaccctcccaggaatggttgggagtctccttcatgatgcct 560
Query: 361 tagctaaaactccaggaacctgacaatgcgccaactcagaagttccaaattgaagcccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagctaaaactccaggaacctgacaatgcgccaactcagaagttccaaattgaagcccag 620
Query: 421 gagcttcagggtcgccaggcgaggagcctctccaaattcccagcacacatgaaccagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcttcagggtcgccaggcgaggagcctctccaaattcccagcacacatgaaccagcat 680
Query: 481 tcttctgaaaccctccccagctctgcttagacaattattccacctgctgctctgcatctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttctgaaaccctccccagctctgcttagacaattattccacctgctgctctgcatctc 740
Query: 541 gggcacctgatctattcaactcgccaagcttctttgacaagaaactttcagatcctcacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggcacctgatctattcaactcgccaagcttctttgacaagaaactttcagatcctcacc 800
Query: 601 tacaaaggcacagttactagcaccctccaggtcacattccagagccacctttatc 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacaaaggcacagttactagcaccctccaggtcacattccagagccacctttatc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
