Query= MSMg01no184_h01.b1 MSMg01no184_h01.b1 CHROMAT_FILE:
MSMg01no184_h01.b1 PHD_FILE: MSMg01no184_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:49 2005
(286 letters)
>mm_chr18_48404078_48404763
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 5 gaattccagtctctctgcatcctctttctcactcaggaaatcgcagttatctgcttctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtctctctgcatcctctttctcactcaggaaatcgcagttatctgcttctgt 264
Query: 65 ctttcctgtcatataaatctcaatgatttatttcacaagaatgtttgtgttgtatcctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttcctgtcatataaatctcaatgatttatttcacaagaatgtttgtgttgtatcctgg 324
Query: 125 gttcccagatgttttaggatactcctgtcttccccagccctccacttcctattgatcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcccagatgttttaggatactcctgtcttccccagccctccacttcctattgatcaat 384
Query: 185 actcagtgttgtattttgggtcaccaatttatacatttttaaagatcgaaaacatgctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcagtgttgtattttgggtcaccaatttatacatttttaaagatcgaaaacatgctgg 444
Query: 245 aaataatcttggttattataacttgcttttaaattcttccat 286
|||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 aaataatcttggttattagaacttgcttttaaattcttccat 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no184_h01.g1 MSMg01no184_h01.g1 CHROMAT_FILE:
MSMg01no184_h01.g1 PHD_FILE: MSMg01no184_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:49 2005
(659 letters)
>mm_chr18_48560559_48561617
Length = 1059
Score = 1160 bits (600), Expect = 0.0
Identities = 645/660 (97%), Gaps = 2/660 (0%)
Strand = Plus / Minus
Query: 1 aaaagcctcttctttgaacatattatttccagttagatgctatgatgaagacccttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aaaagcctcttctttgaacatattatttccagttagatgctatgatgaagacccttctct 800
Query: 61 ctcagaactcatcctattaagttaattccagttagccgaagtttgaatttctacgctcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctcagaactcatcctattaagttaattccagttagccgaagtttgaatttctacgctcga 740
Query: 121 tagagttatttctgcattcaatagagttatccctgctctttataaagttaggcttgagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tagagttatttctgcattcaatagagttatccctgctctttataaagttaggcttgagtt 680
Query: 181 gacattttctgtaaatgtgttttctctctctttatgtggggtttttagaacaagtataaa 240
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 679 gacattttctgtaaatgtgttttctctctttttatgtggggcttttagaacaagtataaa 620
Query: 241 aatatacccactgactttcataaaatagctacattgctctaaattcagaaatgctagtgg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatatacctactgactttcataaaatagctacattgctctaaattcagaaatgctagtgg 560
Query: 301 ttcgctttatttcaatacagtcacagatcagtatatttaaggatacatttcacatgtgtg 360
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 559 ttcgctttatttcaatacagtcacagataagtacatctaaggatacatttcacatgtgtg 500
Query: 361 tacaataaatatagttgtgtatatgtgtatctgtgtgtgggttacccatgccataatgtc 420
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 tacaataaatatacttgtgtatatgtgtatctatgtgtgggttacccatgccataatgtc 440
Query: 421 cctgcttttactgattggacatttccttcaaagatgagatcagactaa-tcgtattgtag 479
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct: 439 cctgcttttactgattggagatttccttcaaagatgagatcagactaact-gtattgtag 381
Query: 480 gagacactaaggccgtagcatcttcagccatactaacagcttataccagttgcaaatcta 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 gagacactaaggccgtagcatcttcagccatactaacagcttataccagctgcaaatcta 321
Query: 540 agaatttgaggataagtacagtaaaactagagagacaggctatctttcagctcattgagg 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaatttgaggataagtacagtaaaactagagagacaggctatctttcagctcattgagg 261
Query: 600 gacacgaacaaaggcaagagctaaagcaagcattacaaataacaccccgagttaattggc 659
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 260 gacacgaacaaaggcaagagctaaagcaagcattacaaataacaccacaagttaattggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
