BAC Information

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BAC

Clone NameMSMg01-184K21
Chromosome18 (Build37)
Map Location 21,357,032 - 21,480,156
singlet/doubletdoublet
Overlap geneGm944, LOC665722
Upstream geneDsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
Downstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184K21.T7 (MSMg01no184_k21.b1)MSMg01-184K21.TJ (MSMg01no184_k21.g1)
ACCAG376893AG376894
length1,245709
length of high quality
(start - end)
414 (38 - 451)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no184_k21.b1 PHD_FILE: MSMg01no184_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005CHROMAT_FILE: MSMg01no184_k21.g1 PHD_FILE: MSMg01no184_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,479,750 - 21,480,156)(21,357,032 - 21,357,313)
sequence
NCCCCTCACTCGGCGCTATAGACTCCTATANGGAGAGGATCCGCGGAATT
CTCAAGGATTAATAAAAATATGTATAAAAAGAAACAGTCCACCATAAGCA
AGAAGACAGACATGTAAACAGACACCTAACACATGATGTAAAAGACATGT
GTGTGTGTGTGCATGTACACAGCCAACAAACATATACATATGAAATAATT
ATAAATAAAAGAGGCTATAAAATTGAGAATACGGAGCACTGGAAGGATTC
AAGGGAGATTATCTGGGAGGAGCTGAAGGAGAAAGAGGGTGATATATCAT
TAGACTACTTCCTGCTGATTAGGAGCACCGAGTTCCTTGGAGCAAACTTG
ATCTTCGCTGTCAAGATAACTAATTTCTTCTTTTTCTTGTTTCTTCTTTG
TGCTCTACTACTTAACAAACCATGAGCAACAGCAACCAACAGCCACAAAC
CTTTTTTTTTCCCCCCCCCCCACAGNCNTAGTTTTTATATAAAAAAAGAG
GAGTACCCATCATTCCAAACATCACACAATTGCATAAGCTATCTGCATCT
GTACGAATCACACTCCTGCTAGAGCATGATGCAAGTCATATTTCGCCGCT
ATGTATAATCTGAAGCATCCCCATGTTCCACACCTGATATTAAAATGAAT
AATTATTCCCATAATAGTTCTGTTGTTTTTCTAATAAATCTAAACTCTAT
AATTGTCCCTACAGATATTATTTATATTCACCTTGGTAATTCTTTTCTTG
AAAATGTTTCTGATTTACATTTACTCTTGTTTTTTTTTATTTTAAACAAC
TTTAGATTCTCTCTTTTTCCCTCTTTTGAATTCCTATTCTTATTTTCATC
TTCTGTAAAACTTATGCTGTTTTTTTATCACTCCTTGCTTTCCCTTTTTT
CTATTAAATTTTATCCACTTTTTCTTCCTTTCTATTTTTCTTTTCTTAGT
ATCTCTTTTCTTCTTCTTATCTTTGTATTCTTTTTTTAATCTGTATTATT
TATTTTTATTTTCTTTCTTTCTATTTTTACTCTTTTTATTTTCTTTTCTT
TGTTTTTATCTTCCTTTTATCTTCTATTATATATTATTTTTTATTTTTTT
TATCTCTTTTTTTATTATTTTAATCTCTATTTTATAATACTCTTAGCTTC
TTCTTTTTCACTTTCTTTTTATCTCCTCCTTTATTCATTTTCCATTATAC
TTCGTCATTTCCTTCCCTGCTTATATCCCACATTTATTTCTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGTTCACTTCTTAGCCAGTT
GCTCAAAACTTTAACACTTTCCCAGGGGCTCAGAATTACAATCGAGGATT
AAGTTGCAAGATCAGCACAAAAAATCTGATCGGAAGCACAGTGTCGGAGT
AGCCAGAGTCACAGTTGATCGAGCACTGGGAACCCATGCCCAAGTCTAAT
GGGGTACTAACTCCGCATGTGCCCAGAGAGGGAATCTTTAATCCGTTAGT
GTCTCCTGGAGGCTCATGGTTGGGGTGGACCACCAGAGGGACTGAAGGTT
GCCTCTGTTTTTTTTTTTCCCCCCCCCCCCCCAGGGGCTGAAAACCTGAT
TGGGGACCCTGGGGGAGATGGTGAAAATAAAAAGATGAGTCCCAGCTAAA
ATTAGGTTAGAATGAGGTGTGTCAGGTAAGAGGAGGACTAACAGGAGCCA
GACATCACCTCTGACCGGACCCATCTGGTTCTCAGTACTACTGACAATGT
CTACATAACAAATGCCACAGGAGAGCACTGCATGCCCATCTGGGGTCTGT
AGGGTAGTAACCTCCTGTCTGTGGCCATGGAAGATGCCTGTTTTCATCAC
CTTTCCCTTTGCTATTATGTTGTGTACTGTCTACCATATCATTCGTTTTA
CCTTATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_k21.b1 MSMg01no184_k21.b1 CHROMAT_FILE:
MSMg01no184_k21.b1 PHD_FILE: MSMg01no184_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:09 2005
         (414 letters)



>mm_chr18_21479714_21480527
          Length = 814

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattctcaaggattaataaaaatatgtataaaaagaaacagtccaccataagcaagaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaattctcaaggattaataaaaatatgtataaaaagaaacagtccaccataagcaagaa 384

                                                                       
Query: 68  gacagacatgtaaacagacacctaacacatgatgtaaaagacatgtgtgtgtgtgtgcat 127
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 383 gacagacatgtaaacagacacataaaacatgatgtaaaagacatgtgtgtgtgtgtgcat 324

                                                                       
Query: 128 gtacacagccaacaaacatatacatatgaaataattataaataaaagaggctataaaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtacacagccaacaaacatatacatatgaaataattataaataaaagaggctataaaatt 264

                                                                       
Query: 188 gagaatacggagcactggaaggattcaagggagattatctgggaggagctgaaggagaaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gagaatacggagcactggaaggattcaagggagattatctgggaggagctgaaggagaaa 204

                                                                       
Query: 248 gagggtgatatatcattagactacttcctgctgattaggagcaccgagttccttggagca 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gagggtgatatatcattagactacttcctgctgattaggagcaccgagttccttggagca 144

                                                                       
Query: 308 aacttgatcttcgctgtcaagataactaatttcttctttttcttgtttcttctttgtgct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 143 aacttgatcttcgctgtcaagataactaatttcttctttttcttgtttcttctttgtgca 84

                                                          
Query: 368 ctactacttaacaaaccatgagcaacagcaaccaacagccacaaacc 414
           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  caactacttaacaaaccatgagcaacagcaaccaacagccacaaacc 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_k21.g1 MSMg01no184_k21.g1 CHROMAT_FILE:
MSMg01no184_k21.g1 PHD_FILE: MSMg01no184_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:09 2005
         (283 letters)



>mm_chr18_21356832_21357514
          Length = 683

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatagttcacttcttagccagttgctcaaaactttaacactttcccaggggctcagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatagttcacttcttagccagttgctcaaaactttaacactttcccaggggctcagaat 260

                                                                       
Query: 61  tacaatcgaggattaagttgcaagatcagcacaaaaaatctgatcggaagcacagtgtcg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tacaatcgaggattaagttgcaagatcagcacaaaaaatctgatcggaagcacagtgttg 320

                                                                       
Query: 121 gagtagccagagtcacagttgatcgagcactgggaacccatgcccaagtctaatggggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtagccagagtcacagttgatcgagcactgggaacccatgcccaagtctaatggggta 380

                                                                       
Query: 181 ctaactccgcatgtgcccagagagggaatctttaatccgttagtgtctcctggaggctca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaactccgcatgtgcccagagagagaatctttaatccgttagtgtctcctggaggctca 440

                                                     
Query: 241 tggttggggtggaccaccagagggactgaaggttgcctctgt 282
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtggggtggaccaccagagggactgaaggttgcctctgt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)