BAC Information

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BAC

Clone NameMSMg01-184N05
Chromosome18 (Build37)
Map Location 57,738,716 - 57,738,992
singlet/doubletsinglet
Overlap gene1700011I03Rik
Upstream geneRnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 4930511M06Rik
Downstream gene2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2, Slc27a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N05.T7 (MSMg01no184_n05.b1)MSMg01-184N05.TJ (MSMg01no184_n05.g1)
ACCAG376993AG376994
length807902
length of high quality
(start - end)
281 (59 - 339)103 (77 - 179)
definitionCHROMAT_FILE: MSMg01no184_n05.b1 PHD_FILE: MSMg01no184_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:22 2005CHROMAT_FILE: MSMg01no184_n05.g1 PHD_FILE: MSMg01no184_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTATAATCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTTGTGACTGTGATTCCATAGAGGAGTAAAA
GCAGCTTGGAGACTTGAGTGTGAAGGTGGATGTCATAAATCAATATGATT
TTGTTGTGCCTCCTTTGGGGAAGGGATGGGTGCATTTTGTAATAAATACA
GAATATATACATCATACTATGTAAGAACATTTTGGGTAATCCATATATTA
TAAGAGCATATGTATGTATACACATGTTTTTGCATGTATATGTGTATATA
TATACACATATATAGTGTGTGTGTGGTAGTGTGAATAAGAATAACTTCCA
GAGGCTCATACGCTCTTTTTTTTTTTCCCCCCCCCCCCCCCCTGTTTACA
ATGTATTAACTAACTGTTTTTTTTTCCCCCCCCACAAAAAAAATAACTGT
ATTTTTTTCCTCCCTTCTTTTACCTCCCCTATGTTATACACCCTGTTTTT
CTTTCCTACTTTTTTAAATCCCCTTTTTTATTTATCCACCCTCACTCCCT
TTTTAATCCTCTTAATTTCATTATACCCCCCCCCGCCTATATAAATATCA
TATTTATTTTCTTTTTTATCTTTTCATTCTCTTACTTAAACACTATAACT
ACGTCTTTCTATCTTATCTATTATTATAATTTTTAACCTCATTACCGCTT
TTTTTTAATACTACTACTTATCCCCGATTTTTCCCCCTTCCCCATTTTTT
TATTTTCTTCCCCTCTATCTTACCATCATTATCTTTGCTTTCTCTCACAA
AATTAAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTTTCACGTTTAAAGAAGA
CTGAGGTTCTATGACATGAATAGGTTACATGCTTTCTTTTGTTTAATATT
GTGCTGTGTGTGTGTGTGTGTGTGTCCCCCCCCCCACCCCCCCCCCCCCC
CCANCCCCCCCAAAAAAACCCCCCCCCCCACCCCACACCACCCCCCCCCC
CACCCCCTCCCCCCCCCCCCCACCCCACCCACCCCCCCCACCCACCACAC
CNCNCCACCCCCCCCCAACCCACCNTCTTTTTTTTCACCCCCCCTCCCCC
CCCACCCCCCCCCCCCTCCTTTTTTTTTCCCCCCCCCCCCACCCCCCCAA
AANNAAAAAAAAAAAAAAAAANATTNTATTTTCCCCCCCCCCCCCCCCCA
AACAAAACAAAAACCCCCTCCCGCGGCCCGCCCCCCCCCCCTCCCCTCCT
CCCCTCCACCCCCCTCCCCCCCCCCACCCCATCCCTTCCACCCCCCCCCC
CCCCCCCGCACCACCACCCACCCCCACTGTCGACCCCGCCCCCACTCACC
CCACCCTAGCTCCTCCTCTCCTCCCCCCACCCCGCACCTCCTCTCCTCGC
CCTCCTTCACTCCCCCCCTATACCGCCCACCACCCCGCACCCCCTCCTCC
TACTCCCCCCCTCACCCCCCATATCCCCCCTCTACTCTTCCCTCGCCCTC
CTCACCCCCCTCACCTCTCCTCCCCTCCCCCCCCCCCCCCCCTCTATCTC
CCCCCCCTCCATTTCCTCTCCGCCATTTCCCCACCCGCTCCCTCTTCTCA
TTTTATTTCCACCCCCCCCCTTTCCTCCCTCCCCCCCCTCTCCCCCCTTC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n05.b1 MSMg01no184_n05.b1 CHROMAT_FILE:
MSMg01no184_n05.b1 PHD_FILE: MSMg01no184_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:22 2005
         (281 letters)



>mm_chr18_57738512_57739192
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgtgactgtgattccatagaggagtaaaagcagcttggagacttgagtgtg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcttttgtgactgtgattccatagaggagtaaaagcagcttggagatttgagtgtg 264

                                                                       
Query: 65  aaggtggatgtcataaatcaatatgattttgttgtgcctcctttggggaagggatgggtg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtggatgtcgtaaatcaatatgattttgttgtgcctcctttggggaagggatgggtg 324

                                                                       
Query: 125 cattttgtaataaatacagaatatatacatcatactatgtaagaacattttgggtaatcc 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 cattttgtaataaatacagaatatatacatcatagtatgtaagaacattttgggtaatcc 384

                                                                       
Query: 185 atatattataagagcatatgtatgtatacacatgtttttgcatgtatatgtgtatatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatattataagagcatatgtatgtatacacatgtttttgcatgtatatgtgtatatata 444

                                                
Query: 245 tacacatatatagtgtgtgtgtggtagtgtgaataag 281
           |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacacatatatagtgtgtgtgtggtagtgtgaataag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)