BAC Information

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BAC

Clone NameMSMg01-184N20
Chromosome18 (Build37)
Map Location 11,271,920 - 11,272,229
singlet/doubletsinglet
Overlap genenone
Upstream geneAK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N20.T7 (MSMg01no184_n20.b1)MSMg01-184N20.TJ (MSMg01no184_n20.g1)
ACCAG377022AG377023
length749734
length of high quality
(start - end)
311 (57 - 367)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no184_n20.b1 PHD_FILE: MSMg01no184_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:25 2005CHROMAT_FILE: MSMg01no184_n20.g1 PHD_FILE: MSMg01no184_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCAAGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATGTCACCAAATCAGTGTCCTGTTGCACAAGAA
AGCTAACTGATAAATCAGAGAAACTGACACCTTTTACAACGTTACACTGG
TTTGAGTAATTCTTTCTTACAAGTGGTACATGGATTAGCTTTCTCCTCAT
TGCTGTTCCCTTGGAAAATAGAAACTAATAAGTTAATCATATTTTTTTTT
AAAAAAAGCAAGAGTCAAAGGTGTATAGTCCATCTGAATTTGGCCTGGGT
GGGTGGAGAATGGAGCTAGAATATCACTCCCGAATTCACGTGTTGTAATC
CCCAGTGGGAGGTGCTTGGATGNGTTCCCCCCGGCACCCGCCTGGGTCAT
GAGAGAGACCTTAAGGCACACCCTTCTGAATAACAAAACATATGGTGGGT
TGAGGCACTACAGTCTCTCACTGGTCTGGAATATCACCCAGATCTAGAAC
CTTTTTTCTTGCTCAAATAAACTCTGATATTTAACTTACCTCATTTTTCC
TTTTAACATAAATCCTATTTAAGAGTTTAATTTGTCTAGTTTGGCAATCA
GAAGGAATAAAACAGGTGTCATGTTTCTTGGATTAGTGTTGGATAGCCTG
AGTTTGGGTTGAACCAGTAAGCTTGAATCAATAAGCTTTTAAAAAATCAA
AACATTTATTAAAATGGGAATTCTTCTGTATCTTGAGCCAATTGTGTTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGGGTGTTGGATCTTGTCCAATGCTTTCTCTGCGTCTAAGGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTCCATATATTAAACCATCCCTGCATCCCTGTAATAAAACCTACT
TGGTCAGGATGGATGATTGTTTTAATGTGTTCTTTGATTCGGTTAGCGAG
AATTTTATTAAGTATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGCACCCCCCCCCGCCTTAGTTGTCATAGTAATT
GTGGCTTCATAGAATGAGTTGGATAGAGAACCTTCTACTTCTATTTTGTG
GAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTATTGGTTGGGAGACTA
TTAATGACTGCTTCTATTTCTTTAGGGGATATGTGACTGTTTATATCATT
ATCTTGATCCTGATTTATCTTTGGTACCTGGCTTCTGTCCAGAATTTTGT
CCTTCTTGTCCCGATTCTTCCATTTTGTTGAGTATAAAATTCTTTTATAT
TATCTGAAGCTGTACTCAAATTCCCCCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n20.b1 MSMg01no184_n20.b1 CHROMAT_FILE:
MSMg01no184_n20.b1 PHD_FILE: MSMg01no184_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:25 2005
         (311 letters)



>mm_chr18_11271842_11272552
          Length = 711

 Score =  526 bits (272), Expect = e-154
 Identities = 298/316 (94%), Gaps = 16/316 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgtcaccaaatcagtgtcctgttgcacaagaaagctaactgataaatcagag 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 gaattccatgtcaccaaatcagtgtcctgttgcacaagaaagctaagtgataaatcagag 329

                                                                       
Query: 65  aaactgacaccttttacaacgttacactggtttgagtaattctttcttacaagtggtaca 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaactgacaccgtttacaacgttacactggtttgagtaattctttcttacaagtggtaca 269

                                                                       
Query: 125 tggattagctttctcctcattgctgttcccttggaaaatagaaactaataagttaatcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggattagctttctcctcattgctgttcccttggaaaatagaaactaataagttaatcat 209

                                                                       
Query: 185 attttttttt----------aaaaaaagcaagagtcaaaggtgtatagtccatctgaatt 234
           |      |||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 a------tttaaaaaaaaaaaaaaaaagcaagagtcaaaggtgtatagtccatctgaatt 155

                                                                       
Query: 235 tggcctgggtgggtggagaatggagctagaatatcactcccgaattcacgtgttgtaatc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tggcctgggtgggtggagaatggagctagaatatcactcccgaattcacgtgttgtaatc 95

                           
Query: 295 cccagtgggaggtgct 310
           ||||||||||||||||
Sbjct: 94  cccagtgggaggtgct 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)