BAC Information

Click to search

BAC

Clone NameMSMg01-184O12
Chromosome18 (Build37)
Map Location 46,920,598 - 46,920,902
singlet/doubletsinglet
Overlap geneAp3s1
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12
Downstream geneLOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184O12.T7 (MSMg01no184_o12.b1)MSMg01-184O12.TJ (MSMg01no184_o12.g1)
ACCAG377052AG377053
length722722
length of high quality
(start - end)
312 (63 - 374)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no184_o12.b1 PHD_FILE: MSMg01no184_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:28 2005CHROMAT_FILE: MSMg01no184_o12.g1 PHD_FILE: MSMg01no184_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAGACCNNNNTTGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCGTATTGAAAAGGTAGTTTCTAGTCAAA
ATCTGGAAGACTGAAATGGAGCCTGCCAAGTGCGTAGCAAAGGGAAGAAT
ATCCCAGGTATAAGTCAGCAAGTACAAAGTCTAAAGTAGGCAAAGGCCTG
TCCTGAAGCATCAACAAGAGGCTAAGCACAGGAGGAGACAGAAGACAAGC
AACAGGAGGGGGGTCGGAACACATAGGCTCCTGGGTAGCCCATGACAAAT
GTGGCTTTTACTCTAATAAAAGCTGAGGTTATAAAGAGTCTAGAATAAAA
GGTATGAGATGCGGTGTGTTATTTTTTTACTTGCCTGGCGCACCACGTAA
AGACCTAAAACAGTAGAGAGACTGTCAGGAAACTGCCAAAATACAGACAA
ATGGGGTAGCCTGGACCACAGTGAAGAAATGAGAGCTCAGGCAAAGGATT
TGCTTAAGATGGAGCCGAACACAGAGAATAAGACCCAAGAACAAGCAAGC
ACTCAGGTTCTGACTCATCCACTTGAAGAGTTCAGCTGCTAGTAACAATA
AGACAAAAGCTGCAGAAAGTATAGATTTTAAATCTACCTCAGTCTAAGAT
CTTCATGTAATACCCAAGCGGAGACATTCAATAGGATATTGGGCCTTNAA
ATCAGCCTTTCAAAGGAAAGGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCAGAATGAGAGAGAGAGAG
AGAGAGGGAGAGAGAGAGAGAGAGGACTAGAACATGAAAGTAAAGGCAAT
CCTTAGCATAATAGAAAACAATCAAATAGCCCCTCATCCCCAACACACAT
ACAGAATGAGGTATGGAGAGGAACAAGAAATACATAAAATAAGCAGAATA
TAATTAACAAAATAACAGAAGAAAATTCATACCTATTGGTAATAATCTTA
AAAGTGAATGAATGATTAAATTAGTCAATTAAAATATATAGATGCTATTA
TTTTTAAAAAATAAGACACAACTATTTGTTGCCTACAAGAAACTCACTGG
TAAAGATATACTCGACTTAAAGTAAAGTAATGGAAAATGTGTATCACACA
AATGGAAATCAGAAGCATAAATATAAATCAGATTTTAAATAGAAAACTAT
AAAATGAGAAAAAATATATCCAGATGCAAGGATTGACAGTAAAAAGATAC
AACAATCATAAATATATGTATACCCTACATAGGATCACCCACTTATATAA
AGCAAATATTGAGTCTCAAGGGAAAATTAGGGTCTTGCAACAATAGTTGG
AAATGGTAACACCATTTCTTCAGCACACACACATATACACAAAGTCTGAG
TTCATATATAGCAAAGGATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_o12.b1 MSMg01no184_o12.b1 CHROMAT_FILE:
MSMg01no184_o12.b1 PHD_FILE: MSMg01no184_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:28 2005
         (312 letters)



>mm_chr18_46920236_46920947
          Length = 712

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgtattgaaaaggtagtttctagtcaaaatctggaagactgaaatggagcctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaattccgtattgaaaaggtagtttctagtcaaaatctggaagactgaaatggagcctgc 608

                                                                       
Query: 65  caagtgcgtagcaaagggaagaatatcccaggtataagtcagcaagtacaaagtctaaag 124
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 607 caagtgagtagcaaagggaagaacatcccaggtataagtcagcaagtacaaagtctaaag 548

                                                                       
Query: 125 taggcaaaggcctgtcctgaagcatcaacaagaggctaagcacaggaggagacagaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taggcaaaggcctgtcctgaagcatcaacaagaggctaagcacaggaggagacagaagac 488

                                                                       
Query: 185 aagcaacaggaggggggtcggaacacataggctcctgggtagcccatgacaaatgtggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aagcaacaggaggggggtcggaacacataggctcctgggtagcccatgacaaatgtggct 428

                                                                       
Query: 245 tttactctaataaaagctgaggttataaagagtctagaataaaaggtatgagatgcggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttactctaataaaagctgaggttataaagagtctagaataaaaggtatgagatgcggtg 368

                
Query: 305 tgtta 309
           |||||
Sbjct: 367 tgtta 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)