BAC Information

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BAC

Clone NameMSMg01-185B02
Chromosome18 (Build37)
Map Location 58,937,568 - 58,937,878
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc12a2, 9330166H04Rik, Fbn2, Slc27a6, Isoc1
Downstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185B02.T7 (MSMg01no185_b02.b1)MSMg01-185B02.TJ (MSMg01no185_b02.g1)
ACCAG377169AG377170
length743799
length of high quality
(start - end)
317 (64 - 380)497 (76 - 572)
definitionCHROMAT_FILE: MSMg01no185_b02.b1 PHD_FILE: MSMg01no185_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:41 2005CHROMAT_FILE: MSMg01no185_b02.g1 PHD_FILE: MSMg01no185_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTNNNGGACATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCAGTTCACAGTAGCAGCAGGAGCAGCAA
CAACAACAACCACAGGGTAAATCAAACCAACTCACTCGGTGGGAAGAGGG
AAGGCCAAGCAAGCAAAAGACAAGATCTTCCATCTACTGTAGATTTTTAT
CTGGACTGCTACCAGAAGGTCCCTCCCATAATCAGGATGGGTCTTCTCTC
CTCAATTAAAGCAACCAAGCCATCTTTTCCCTACTCCGGTGACTCCAATT
CGAGGCAAGGCAACATTAAAACCAACCATGATGGTATATTTCAGGTGTTT
AGCATGCTATTGTTACTTGGCAAATACCAATAACACCCCCGCACTCGGAA
GACAGGAGACAGAATGGCAATGTCCTCCATGATCTGGTGTCCTGTAAACC
TAGCTACAGACTTGTAATGAGGTGAGAAAAACACAGTAACCTGAAAAGGG
AGTTTCCTCTAGAATCCTTAAAATCCCGAGCACTGTGAGTATAATTTGGT
TTTAGTCAAATTATGATAAAGCTATCATGATACACAAATGAAACTCATCT
GCCCTTCCAGTTGGCCCTGGTGGGGACTCCAGTGGTGTAATAGATAAATA
TGTAGTCCTAACATGACAATTGACCATGGTATATGTCAGCAGGCAGCCAT
TACAAAGAAAAAAAGGTCAGAGTCCCTGTGGTCAGAGCAGAGA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGAGAATTTTTCGAAGGTATATAA
ATGCTAGGGCCCCAAGAGGTAGCGTGGCCTATTGATTGATTGTTGATCGC
AGTGTGTTAAGTAGCCATGCACAAAGAAGAAAGAAGAAGTTAGATATACC
GACAGTGAAGATCCAACTTGCCCCAAGGAATCTGGTGCCCCTGATCAGCC
AGAAGTTGTCCAATGATAATGTCAACCTCTTTACAACCTCTGACTTTATC
CAGGGATCTCTTTCCTTTCCTCTCTACCCTCATTTTTCTCTTCTATCTAG
TGTTAGGGTAGAAGAATAGAGTGGAAGGGGGTAGAAAAAAGAAGAACCCA
GAAAGTAGCAAAAGACCTGCTACATAGATAAGCTCAGAAAAGGCCACGCG
CATCCATGTAACCTTGTTCTGTTTTGATGAGCGAAGCTCCTGTGATAAGC
TTGCCCTCTGTGATGGTTTGTGTATGCTTGGCCCAGGGAATGGCACTATT
TGGGGGTGTGGCCTTGTTGGAGTAGGTGTGTGGTAATGTCTCACACTGTT
TTTATTCTCATCTACTTGGTATGCATAGGCAGCGGATACTTCCTGACTTT
TTAGTCTCCGCTTGTCTCTCTATGGAATTGTTCCTTATCGTTTTGACGTT
ACCTTTGTTCTGTTTTCGTAATTCTTTCTTCTTACGTCGCCTCTTTGTTT
CGCTCTCTCTTGATAATAAACTTCCTTCGCTAACTTAGTATTTCTCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_b02.b1 MSMg01no185_b02.b1 CHROMAT_FILE:
MSMg01no185_b02.b1 PHD_FILE: MSMg01no185_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:41 2005
         (317 letters)



>mm_chr18_58937162_58937878
          Length = 717

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcagttcacagtagcagcaggagcagcaacaacaacaaccacagggtaaatcaaacca 66
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 717 attcagttcacagtagcagcagcagcaacaacaacaacaaccacagggtaaatcaaacca 658

                                                                       
Query: 67  actcactcggtgggaagagggaaggccaagcaagcaaaagacaagatcttccatctactg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actcactcggtgggaagagggaaggccaagcaagcaaaagacaagatcttccatctactg 598

                                                                       
Query: 127 tagatttttatctggactgctaccagaaggtccctcccataatcaggatgggtcttctct 186
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcgatttttatctggactgctaccagaaggtccctcccataatcaggatgggtcttctct 538

                                                                       
Query: 187 cctcaattaaagcaaccaagccatcttttccctactccggtgactccaattcgaggcaag 246
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 537 cctcaattaaagcaaccaagccatcttttccctactccagtgactccaattagaggcaag 478

                                                                       
Query: 247 gcaacattaaaaccaaccatgatggtatatttcaggtgtttagcatgctattgttacttg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcaacattaaaaccaaccatgatggtatatttcaggtgtttagcatgctattgttacttg 418

                      
Query: 307 gcaaataccaa 317
           |||||||||||
Sbjct: 417 gcaaataccaa 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)