BAC Information

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BAC

Clone NameMSMg01-185M03
Chromosome18 (Build37)
Map Location 31,903,252 - 31,903,444
singlet/doubletsinglet
Overlap genenone
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549
Downstream geneAmmecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185M03.T7 (MSMg01no185_m03.b1)MSMg01-185M03.TJ (MSMg01no185_m03.g1)
ACCAG377649AG377650
length729704
length of high quality
(start - end)
646 (65 - 710)193 (108 - 300)
definitionCHROMAT_FILE: MSMg01no185_m03.b1 PHD_FILE: MSMg01no185_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:33 2005CHROMAT_FILE: MSMg01no185_m03.g1 PHD_FILE: MSMg01no185_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTT
CAAAAGAGACTACAGACAGGCTGATTTTCCAGGACAAGAAATAAAATCCA
TCTATCTCTTGTACAGGAATCACACCTTAGCTTTAAAGAAAGCACCACCT
TAGGATAAAGGATAGACAAAAATACTCGAATCAAATGTGACCAGTAAACA
AGTGAGTGTCATTATTCTAATATCTAACAAGATAGACTTAATTAAAACTA
ATCAGGATAGATAAAGAGGACTACTACATTCTAATCAAGGAAACAGTTAA
TAAGGAGTGCATTACTATCCTAAACATACATGCATTCAAACTCTGGAGAA
CCCAATTGGATAATAATATATACCACTATATTTAAAAACAAATTAGCATC
ACTCCATTAATAGCACCCGATTTCGAGCTGGGCGTGGTGGCACACGCCTT
TAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC
CAGCCTGGGGTCTACAAAGTGAGTGCCAGGACAACTAGGGTTACATAGAG
AAACCCTGTCTCAGAAAAAAAAAAAAAGTAGGTGATTTCAATTTTCTTCA
ATTGATAGATCATCTGAATAAAAAACAGAGAAGCATCAGAATCAACTGAC
ATCATATATCAAATGGACTTAGTGAAGTCTAAGAATATTCCACCCAAACA
CCAAAACAATACACAATCTATTGAGCAGC
TGGGGGCCGCCTGGTCGTCAGGTGTAGGNGACCTATAGAATTTCCAAAAA
AATTCTGGGAAATAGGTACAAGAGATTCGCTCCTAACAGTGAAGGATTTT
GACGTATGAACATAGAGATGTAGCTAATCACAGGGCAGGACTTAAACGGG
AAAATTGAATTATGAGTTAGCAGGAACAAGCCAAGGCTTGTGGCTTAGGC
ATGTATTCATATATAAGAAGTCTCAGGGACATTATTTTAGGCAACAAAGA
GACCAGGAGGAAAAGGCCACTACTACAGAACTACTGGAGGTTATCATTAT
TGCTGATTTCAAATTGTACCTCAGGACTCTAGCAGTATTTTTTTTTTCGC
CCCCCCACCCACATACTTTGACATATGAAATCAAATTGAAGACTCCAAAA
TAAAAACACAAGACCTATGGACGCCTGACTTTTTTATATAAAGAAGGCAG
AAGAAATACACACCAGGAAAAAAGACAGCATCTTCAACAGATGTTCAAAT
TGAATCGCTGTATGTAGAGAATACAATTAGACTCACACCTATCACCCTAC
AAGAACTTCTGACTCCAAATGGACCAAAGACCTCGACATAAGACCAGATA
CACTGAATCTGAATAAAGAAAAAGTGGAAAATAGCCTTGAATTTACTGGT
CCAGGAAAAACTTCCTGACAAGGACATCAGGAGCCATAGGGACTATGGAA
CATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_m03.g1 MSMg01no185_m03.g1 CHROMAT_FILE:
MSMg01no185_m03.g1 PHD_FILE: MSMg01no185_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:33 2005
         (193 letters)



>mm_chr18_31903052_31903644
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacatagagatgtagctaatcacagggcaggacttaaacgggaaaattgaattatgagt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 393 gaacatagagatgtagctaatcacagggcaggacttaaatgggaaaattgaattatgagt 334

                                                                       
Query: 61  tagcaggaacaagccaaggcttgtggcttaggcatgtattcatatataagaagtctcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tagcaggaacaagccaaggcttgtggcttaggcatgtattcatatataagaagtctcagg 274

                                                                       
Query: 121 gacattattttaggcaacaaagagaccaggaggaaaaggccactactacagaactactgg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gacattgttttaggcaacaaagagaccaggaggaaaaggccactactacagaactactgg 214

                        
Query: 181 aggttatcattat 193
           |||||||||||||
Sbjct: 213 aggttatcattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)