AATAATTTCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATTAATGGAACACTTTAGCTTTTACGTGTGC
AGAGCACTATCAAATATCAGAGGGCTGAATTATTTCACAGAAAATGTAAA
TTTTGAAGCTTCCTCTTCACTATTGTCTGGGTTCCAGGATCTGCACAGTA
TAATGCACTCAGTGTTTATGCATCAGGGCACTAATAAACCTCTGTGTGCA
AATTCACCAGACTTTCAATGTTTGGCCTACTAGTTTCTAACTTTTCAATT
TTGACTAATTTTCAATGTCAGGTGTGATTATTAGTCTTGAGCCCACCCTT
ATTATTTCTGTTCCCCGCATCTACAAATCACAAATCCAGCAAGTTTATGG
TTCAGTGTGCAGAGCAATCTTTCCCATAAACCCCACCTATATTACTGAGT
GCTGCAATTTAGTACCCTAGCCGTGCTCTTGGATAGCTTGTTCTTTGCAC
TCTGAGTAAGCAGCAACTAATTTCTCCCACTAAGTCTCCTGCTCCTTTCT
TATTCATCTGCCCACTTAGTTGCTCACTCCACCACTATCCTAGTAGGTTC
GGTACTGAACCCATTCTGATCGTCTAATGACATGTATCTTGCAGAGGGTA
GACGAGCTTCTCCCCAAGAGGCATGCTCAAGCTTCAGCGTCCACATTTGT
GAAATACTAAGGTAGGTACATTGGCTACTCTGAATATCATTGTG

NCTCTACCNNNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACCCAC
AGGTTGTAGCACTACTAGGAAATATGACCTTTGTTGGAGAAAGTATTTTA
CTGTGGGGAAAGATTTTGAGGTCTCCCATGCTCAAGTGATACCCATTGTG
TCTCACAGTCATCTGCTGCCTATAGATGAAAGATATAAAACTCTCAGCTC
TTTCTCCAGCACCATGTTTGCCTAGATGTGGCCATGCTTCTCACCATGAT
GATAGTGGACTAAACCTCTGAAATTGTAAGCCAGCCCCAATTAAATGTTT
TCTTTTGTAAGAGTTGACATGGTCATGTTTTTTCTTCCCACCCCCCCCAC
TTTAACTATGACACTAGCTGTATAGGAAGACCACCCCCCACAATAAAAAA
AGTGACGCTCATTTGCTCTGTTATTATTGTCATTTTGAAGAGAGTAGTTT
CTGATCTTTCTTACAGATTTCAGAAGCATTACTTTCCCTCCAGGTTTTAT
TTTATGGAATTATGCCTACCGAAAATACTGCTGTTATAAATAATTATTTC
AGTGTCTTACCATCACCATTACGCTGTTATTTCTTCCCATTTCACTTTTT
TGTTTCACCTATTCCCTACATTACCTCACTTCCCGATCCTCTCTGTTACA
TTTCTTACCTTCTCTTCTTCCCCACTTGTCCCCCATACTTTCACTACTTC
GGCGTTTT

Query= MSMg01no185_n07.b1 MSMg01no185_n07.b1 CHROMAT_FILE:
MSMg01no185_n07.b1 PHD_FILE: MSMg01no185_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:38 2005
         (586 letters)



>mm_chr18_31299102_31300087
          Length = 986

 Score = 1027 bits (531), Expect = 0.0
 Identities = 570/587 (97%), Gaps = 8/587 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattaatggaacactttagcttttacgtgtgcagagcactatcaaatatcagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaattcattaatggaacactttagcttttacgtgtgcagagcactatcaaatatcagag 727

                                                                       
Query: 64  ggctgaattatttcacagaaaatgtaaattttgaagcttcctcttcactattgtctgggt 123
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggctgaattaattcagagaaaatgtaaattttgaagcttcctcttcactattgtctgggt 667

                                                                       
Query: 124 tccaggatctgcacagtataatgcactcagtgtttatgcatcagggcactaataaacctc 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tccaggatctgcacagtgtaatgcactcagtgtttatgcatcagggcactaataaacctc 607

                                                                       
Query: 184 tgtgtgcaaattcaccagactttcaatgtttggcctactagtttctaacttttcaatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtgtgcaaattcaccagactttcaatgtttggcctactagtttctaacttttcaatttt 547

                                                                       
Query: 244 gactaattttcaatgtcaggtgtgattattagtcttgagcccacccttattatttctgtt 303
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gactaattttcaaagtcaggtgtgattattagtcttgagcccacccttattatttctgtt 487

                                                                       
Query: 304 ccccgcatctacaaatcacaaatccagcaagtttatggttcagtgtgcagagcaatcttt 363
           ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 ccctgcatccacaaatcacaaatccagcaagtttatggttcagggtgcagagcaatcttt 427

                                                                       
Query: 364 cccataaacccc----acctatattactgagtgctgcaatttagtaccctagccgtgctc 419
           ||||||||        |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccataaa----tattagttatattactgagtgctgcaatttagtaccctagccgtgctc 371

                                                                       
Query: 420 ttggatagcttgttctttgcactctgagtaagcagcaactaatttctcccactaagtctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttggatagcttgttctttgcactctgagtaagcagcaactaatttctcccactaagtctc 311

                                                                       
Query: 480 ctgctcctttcttattcatctgcccacttagttgctcactccaccactatcctagtaggt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctgctcctttcttattcatctgcccacttagttgctcactccaccactatcctagtaggt 251

                                                          
Query: 540 tcggtactgaacccattctgatcgtctaatgacatgtatcttgcaga 586
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcggtactgaacccattctgatcgtctaatgacatgtatcttgcaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)