BAC Information

Click to search

BAC

Clone NameMSMg01-186A01
Chromosome18 (Build37)
Map Location 88,163,585 - 88,231,177
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186A01.T7 (MSMg01no186_a01.b1)MSMg01-186A01.TJ (MSMg01no186_a01.g1)
ACCAG377822AG377823
length769770
length of high quality
(start - end)		560 (46 - 605)500 (77 - 576)
definitionCHROMAT_FILE: MSMg01no186_a01.b1 PHD_FILE: MSMg01no186_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005CHROMAT_FILE: MSMg01no186_a01.g1 PHD_FILE: MSMg01no186_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,230,622 - 88,231,177)(88,163,585 - 88,164,084)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGACCAAAATCATTCTTATAGATCTTCAGTTCCACCCTCTGAAG
TATCTGTGGCTGAGTAGTTTTCTCACCCTGCTTACTACCTGTCAACAGAA
GATAAAACAATCTTTTCACCTACTATGTCCCTAATGAATGCCACACAGAG
AAACAGCAAAGGTGCCTTCCCTTCAGTCATTCTATGGCCTTCTCACCTCT
CCCTCTCCTCATCCTCTTATGAAGCACTCATTCCTATTTTCTTATACCAA
TCTCTGTAGACAGTCCTTGGCATAGGGTTGTTTGAGAAGACTTTGACTCT
CTCTGCCTTCCATGATTATTTTCTCCTACCTCTCAAGTGGGATTGAAGCA
TCCTCACTTGGACCCTTCTGCTTGTTAACCTTGAGTTCTGTAGATTGTAT
CCTAGGTATTCTATACTTTTTTTTTGGATAATATCCACTTATTAGTGAGT
ACATACCATGTATGTCCTTTTGCATCTGAGATACTTCACTCAAGATGATA
TTTTCAGATTCTATCCACTTGCCTGCAAAACTCATGATGTCCTCCTTCGT
AATAGTTGAATAGTATTCCATTGTGTAGATGAACCAAATTTTATGTATCC
ATTCTTCCATTGTAAGGCACTGGAAATGTCTGCCGCTGCTGGCTATCACA
GATAACGCTACCATGGACCGAGAGGATGCATTTTTCTGTGCGCAGGACGG
GTTTATTATATTATCTATG

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGTTGGCCTGG
AACTCAGAAATCTGCCTCCAAAGTGCTGGGAATAACGACATGAGCCACCA
CTGCCCAGAGATGCCATATATTTTTTCCACAAACTAATTCCACAAGTTAA
CTAGATGTATTTTTATTAACTTCATGTACCAGATGAAAGTCCATAGCAAG
TGCTATATGTAGAATGAGATGTGTGTAAATCTATTCCCTGCAGTGATGAT
ATTTTGGAAATAAAAGAACTTATTCATTTATCAAAATATTTATCTGTGAA
ACTAATATATAGTGTTTCAGAGTGATGAAATAATGATTTTGATGATTGCT
AATTCTGTTTTCCCAATTTTACAATCTTGTAAATAGAATGTTAATAAATA
CCAAATATAATTAGAGTAATAGAAGAGCATTTATCATAGACAGTTTATAA
GGAATAGAATTTTGTTTTTTATCTTCATGGTGTCACAAATATTTCCTGAA
ATAATTTATGACTTAAATAATTTTGGNGGAATAAAATGTATTATCTTTAG
ATTACATTGAAAATGTGTTTTAGGTGAAAAGGACGACATATCACAGTGTA
TATTACTACCTTTCAATGTCTGATCCTAAATGTCTCCAATTGCCCGTTCC
AGTTACTATCTTTCATACGAATTGTTCACTTTACCCCCCCTACTGTATTG
GCTGCCTACAACCCTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_a01.b1 MSMg01no186_a01.b1 CHROMAT_FILE:
MSMg01no186_a01.b1 PHD_FILE: MSMg01no186_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
         (560 letters)



>mm_chr18_88230576_88231535
          Length = 960

 Score = 1052 bits (544), Expect = 0.0
 Identities = 553/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaccaaaatcattcttatagatcttcagttccaccctctgaagtatctgtgg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattcaagaccaaaagcattcttatagatcttcagttccaccctctgaagtatctgtgg 543

                                                                       
Query: 65  ctgagtagttttctcaccctgcttactacctgtcaacagaagataaaacaatcttttcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgagtagttttctcaccctgcttactacctgtcaacagaagataaaacaatcttttcac 483

                                                                       
Query: 125 ctactatgtccctaatgaatgccacacagagaaacagcaaaggtgccttcccttcagtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctactatgtccctaatgaatgccacacagagaaacagcaaaggtgccttcccttcagtca 423

                                                                       
Query: 185 ttctatggccttctcacctctccctctcctcatcctcttatgaagcactcattcctattt 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttccatggccttctcacctctccctctcctcatcctcttatgaagcactcattcctattt 363

                                                                       
Query: 245 tcttataccaatctctgtagacagtccttggcatagggttgtttgagaagactttgactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcttataccaatctctgtagacagtccttggcatagggttgtttgagaagactttgactc 303

                                                                       
Query: 305 tctctgccttccatgattattttctcctacctctcaagtgggattgaagcatcctcactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctctgccttccatgattattttctcctacctctcaagtgggattgaagcatcctcactt 243

                                                                       
Query: 365 ggacccttctgcttgttaaccttgagttctgtagattgtatcctaggtattctatacttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggacccttctgcttgttaaccttgagttctgtagattgtatcctaggtattctatacttt 183

                                                                       
Query: 425 ttttttggataatatccacttattagtgagtacataccatgtatgtccttttgcatctga 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 182 ttttttggataatatccacttattagtgagtacatcccatgtatgtccttttgcatctga 123

                                                                       
Query: 485 gatacttcactcaagatgatattttcagattctatccacttgcctgcaaaactcatgatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gatacttcactcaagatgatattttcagattctatccacttgcctgcaaaactcatgatg 63

                           
Query: 545 tcctccttcgtaatag 560
           ||||||||||||||||
Sbjct: 62  tcctccttcgtaatag 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_a01.g1 MSMg01no186_a01.g1 CHROMAT_FILE:
MSMg01no186_a01.g1 PHD_FILE: MSMg01no186_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
         (500 letters)



>mm_chr18_88163385_88164284
          Length = 900

 Score =  913 bits (472), Expect = 0.0
 Identities = 493/500 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggttggcctggaactcagaaatctgcctccaaagtgctgggaataac 60
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggttggcctagaactcagaaatatgcctccaaagtgctgggaataac 260

                                                                       
Query: 61  gacatgagccaccactgcccagagatgccatatattttttccacaaactaattccacaag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ggcatgagccaccactgcccagagatgccatatattttttccacaaactaattccacaaa 320

                                                                       
Query: 121 ttaactagatgtatttttattaacttcatgtaccagatgaaagtccatagcaagtgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaactagatgtatttttattaacttcatgtaccagatgaaagtccatagcaagtgctat 380

                                                                       
Query: 181 atgtagaatgagatgtgtgtaaatctattccctgcagtgatgatattttggaaataaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagaatgagatgtgtgtaaatctattccctgcagtgatgatattttggaaataaaag 440

                                                                       
Query: 241 aacttattcatttatcaaaatatttatctgtgaaactaatatatagtgtttcagagtgat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aacttattcatttaccaaaatatttatctgtgaaactaatatatagtgtttcacagtgat 500

                                                                       
Query: 301 gaaataatgattttgatgattgctaattctgttttcccaattttacaatcttgtaaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaataatgattttgatgattgctaattctgttttcccaattttacaatcttgtaaatag 560

                                                                       
Query: 361 aatgttaataaataccaaatataattagagtaatagaagagcatttatcatagacagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgttaataaataccaaatataattagagtaatagaagagcatttatcatagacagttt 620

                                                                       
Query: 421 ataaggaatagaattttgttttttatcttcatggtgtcacaaatatttcctgaaataatt 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 ataaggaatagaattttgttttttatcttcacggtgtcacaaatatttcctgaaataatt 680

                               
Query: 481 tatgacttaaataattttgg 500
           ||||||||||||||||||||
Sbjct: 681 tatgacttaaataattttgg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |