BAC Information

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BAC

Clone NameMSMg01-186E09
Chromosome18 (Build37)
Map Location 14,102,819 - 14,244,880
singlet/doubletdoublet
Overlap geneZfp521, LOC100040094
Upstream geneImpact, Hrh4, EG383354, LOC665379, LOC100040358
Downstream geneLOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E09.T7 (MSMg01no186_e09.b1)MSMg01-186E09.TJ (MSMg01no186_e09.g1)
ACCAG378006AG378007
length799762
length of high quality
(start - end)		282 (10 - 291)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no186_e09.b1 PHD_FILE: MSMg01no186_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:13 2005CHROMAT_FILE: MSMg01no186_e09.g1 PHD_FILE: MSMg01no186_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,244,614 - 14,244,880)(14,102,819 - 14,103,107)
sequence
AACTCCTATAGGGAGAGGATCCGCGGAATTCCTCTGAGACAGTTCTAAGA
CAATGCTTCCATTTTCTTCCTCCTAAAGCTATTGTTTTATATTTGGTTGT
TGAGTTGGTGCCAAAAATGTCTTTTTTAAACAAATACTTAAAGTGATTTG
GGCACAGGCAGAGTTTGACTCATCTTTGAGAAACTGTGCTTCATGTCATG
AGCCACAAAGAATATATTGTGCAGATCCAGAGGTAACACCTTGGTGAGCA
GACTTGTTCATCATGGGGCTTGCTTATAACAGTGTATAGCTGTTACCTTG
TTCCCTCCTTATCTGGGAGGGATACACTCTAAGTATTTTTTTTTTCTCCC
CCCCCCCCCCATAGTTGTGTGTGTAGTGCTCTTCCTTTCATTTTTCCCCC
CCCCACAAAAAAAAAATTCCACCTTTATTTCGCTTTTTTCCACATATCAA
TTACCTAAATTATCCTTCAAAACTTTACAAATTACTCTGCCAATTATCTT
ATTTCTATAAACCCACTTATTTTTTCCTCATTTCCCATCTACTCATATTT
CTATCACCCTTCCATTTTATTTTACATACTCACCCTATTTACTATAAATA
TTTCTCTTTGTTCTGTCCGCCTCTTCTTACTTCCACTTTATAATTTTATC
GACCTCACCCTTAACTTCACCTTACTTTATACTCTATCCCCATTACACGT
TATTTATTTTTACACATCATTCATCCTCCAATACCTACTTTAATGCTCAT
CTTCTTCTTCCAACCTATATCACCTTTATACTTTCTTCACTTACTTTTT

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATAATATAGATTTCATTGTC
ATGACCATAACCATGGAGAACTTAATTAGTTAAAGGCATTAAAAACTAAA
TCTTCCCCCCAAAAATGTTGCTCCTAATACTACAGTAAAGCTGGAGAGTA
AAGACGTAAGGGTTTGCTCCATTGCAAAGTATTTAAAAAGGGATCAGGGG
GCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCCTCCAAGGT
CCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCCAACCATCCGTAACG
AGATCTGACTCCCTCTTCTTTAGTATCCGACGACAGCTACAGTGTACTTA
CATATAATAAGTTACTACCCCCCTAAAAAAAAAAAAATGGATCAGAGAGA
TGTCTCAGCTGGTAAAGGTCCTTGTCACTTATCCTGATGACTTGAGTTTG
ATCCCTGTCGCCAATATGAAGTATATTTGTTACTGCTCAAATATACCCAT
GCCCTTGATCACTCGCTTTTATATGCCTATTTTAAATATAATACTCTTTA
TTCCCATATTACATTTCTCTTTTCTCTATTTATCATCGTTTCTTCATCAT
CCTCACTCTTTCCCTTTCTTGTCCGTTCTGTTTATATTTCTATTTCTTAA
CTATATATTATCTTTTTCACTACCATTACATTTTTTGTGTATATCAAGTA
TCGCCTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e09.b1 MSMg01no186_e09.b1 CHROMAT_FILE:
MSMg01no186_e09.b1 PHD_FILE: MSMg01no186_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:13 2005
         (282 letters)



>mm_chr18_14244399_14245080
          Length = 682

 Score =  516 bits (267), Expect = e-151
 Identities = 267/267 (100%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcctctgagacagttctaagacaatgcttccattttcttcctcctaaagctattg 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaattcctctgagacagttctaagacaatgcttccattttcttcctcctaaagctattg 423

                                                                       
Query: 76  ttttatatttggttgttgagttggtgccaaaaatgtcttttttaaacaaatacttaaagt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttttatatttggttgttgagttggtgccaaaaatgtcttttttaaacaaatacttaaagt 363

                                                                       
Query: 136 gatttgggcacaggcagagtttgactcatctttgagaaactgtgcttcatgtcatgagcc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gatttgggcacaggcagagtttgactcatctttgagaaactgtgcttcatgtcatgagcc 303

                                                                       
Query: 196 acaaagaatatattgtgcagatccagaggtaacaccttggtgagcagacttgttcatcat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acaaagaatatattgtgcagatccagaggtaacaccttggtgagcagacttgttcatcat 243

                                      
Query: 256 ggggcttgcttataacagtgtatagct 282
           |||||||||||||||||||||||||||
Sbjct: 242 ggggcttgcttataacagtgtatagct 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no186_e09.g1 MSMg01no186_e09.g1 CHROMAT_FILE:
MSMg01no186_e09.g1 PHD_FILE: MSMg01no186_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:13 2005
         (289 letters)



>mm_chr18_14102619_14103307
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagataatatagatttcattgtcatgaccataaccatggagaacttaattagttaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagataatatagatttcattgtcatgaccataaccatggagaacttaattagttaaaggc 260

                                                                       
Query: 61  attaaaaactaaatcttccccccaaaaatgttgctcctaatactacagtaaagctggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaaaactaaatcttccccccaaaaatgttgctcctaatactacagtaaagctggaga 320

                                                                       
Query: 121 gtaaagacgtaagggtttgctccattgcaaagtatttaaaaagggatcagggggctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaagacgtaagggtttgctccattgcaaagtatttaaaaagggatcagggggctggtg 380

                                                                       
Query: 181 agatggctcagtgggtaagagcacccaactgctcctccaaggtccagagttcaaatccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatggctcagtgggtaagagcacccaactgctcctccaaggtccagagttcaaatccca 440

                                                            
Query: 241 gcaaccacatggtggctccaaccatccgtaacgagatctgactccctct 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaccacatggtggctccaaccatccgtaacgagatctgactccctct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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