BAC Information

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BAC

Clone NameMSMg01-186K02
Chromosome18 (Build37)
Map Location 6,976,093 - 6,976,413
singlet/doubletsinglet
Overlap geneMkx
Upstream geneArhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635
Downstream geneLOC664778, Armc4, Mpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K02.T7 (MSMg01no186_k02.b1)MSMg01-186K02.TJ (MSMg01no186_k02.g1)
ACCAG378253AG378254
length779733
length of high quality
(start - end)		325 (46 - 370)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no186_k02.b1 PHD_FILE: MSMg01no186_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005CHROMAT_FILE: MSMg01no186_k02.g1 PHD_FILE: MSMg01no186_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGTCAGTCCTACAATAGTTAATAAGGACACCTACACTCAGCA
AGCACGGGTGTGTGCGCTACACTTACCAAATGCTGTCGCTACAGCTTAAG
ATTCTTCTCTCTAGTTATCTTTTAATCTATTTGTGTTGGGATTTTAAAAG
AAAATTTGCTATATTTAAGTGTCCTTGAATTCTTGGGGAAATTTTCATTT
TCATCACATTCTTTCAACATATTCCCAGATCCAGTTTATATTTTATTAGT
GATTTTACATCAAAATTCTCCAATTTGCCTATAATTTTGTCATTCTGGTG
CTCTTTCAAAACTTTAGTCTTTTACTTATGCTCACCTTGTGGAAAGTGCT
AGAAACTATTTTACCTTTTTTATTATCCTGGAAACTTTTAAATGATGTAT
TACTGTTTCTTCAAATCTTGAAAGTTTTACCTCTGAGATGGAAGATTTTT
ACTTCTGAGCCAATGAAATGGTCTTGACTTTGACGTATTTATATGATCTT
CGCCATTGATTCTTTGAAACGACTCGGCCATTTAATAATTTGAAATAAAT
TTGTTTCTGCCTTTATTCTTTTATTATATTTCTCTTGTTTTTATAGTAAC
GTTTTTGTTATTATTTAGTTCGAAATTATTTTCTTAAAGTACGCTTATTC
CTTTTCCTTATATATACTTAAAAAAGTATTCTAATATACAAAACTTTCAT
TACAAATCGTTATTTCAATTAGCTCAAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTT
AATAGGGTTATTTGATTTTCTTGAGTCCACCTTCTTGAGTTCTTTATATA
TATATATATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGATC
CTTTCCCAATATGTTGGTAGCCTTTTTGTCTTATTGACTGTGTCTTTTGC
CTTACAGAAGCCTTGCAATTTTATGAGGTCCCATTTGTGGATTCTCCATC
TTACAGCACAAGCCGTTGCTGTTCTGTTTAGGAATTTTTTTCCCCTGTGC
CCATATCTTTGAGGTTCTTCCCCACTTCCTCCTCTATAAGTTTCAGTGTC
TCTGGTTTTATGTATAGCTCCCTGACCCACCTAAACTTGAGCTTTGTACA
AGGAGATAAGACTGGATCAATTCCCATTCTTCTATATGATAAGCACCAGT
TGTGCCCGCACCATTTTATTGGAAATGTTATCTTTTTCCCCACTGGATGG
ACTTACGCTACTTGCGATCACGGGACCCCTATTGCTGATCGTCTCTTAGA
GGAGCCCCCGGTTGGGTCTTGGGTCAGTAGGGGTGTTCTGGTATGTTATC
TCCGCTTGGAGCCGTTTTTCTTTCCGGCTTTTTTTATTTTATTGTCACCC
CCCGGTTTTTTACCCCTCCACCACACTCGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k02.b1 MSMg01no186_k02.b1 CHROMAT_FILE:
MSMg01no186_k02.b1 PHD_FILE: MSMg01no186_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:40 2005
         (325 letters)



>mm_chr18_6975890_6976614
          Length = 725

 Score =  582 bits (301), Expect = e-171
 Identities = 316/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcagtcagtcctacaatagttaataaggacacctacactcagcaagcacggg 63
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 524 ggaattcttcagtcagtcctacaatagttaataagaacacctacactcagcaagcatggg 465

                                                                       
Query: 64  tgtgtgcgctacacttaccaaatgctgtcgctacagcttaagattcttctctctagttat 123
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 464 tgtgtgtgctacacttaccaaatgctatcgctacagcttaagattcttctctctagttat 405

                                                                       
Query: 124 cttttaatctatttgtgttgggattttaaaagaaaatttgctatatttaagtgtccttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cttttaatctatttgtgttgggattttaaaagaaaatttgctatatttaagtgtccttga 345

                                                                       
Query: 184 attcttggggaaattttcattttcatcacattctttcaacatattcccagatccagttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attcttggggaaattttcattttcatcacattctttcaacatattcccagatccagttta 285

                                                                       
Query: 244 tattttattagtgattttacatcaaaattctccaatttgcctataattttgtcattctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tattttattagtgattttacatcaaaattctccaatttgcctataattttgtcattctgg 225

                                
Query: 304 tgctctttcaaaactttagtc 324
           || ||||||||||||||||||
Sbjct: 224 tgttctttcaaaactttagtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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