BAC Information

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BAC

Clone NameMSMg01-186K06
Chromosome18 (Build37)
Map Location 58,612,417 - 58,612,710
singlet/doubletsinglet
Overlap genenone
Upstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K06.T7 (MSMg01no186_k06.b1)MSMg01-186K06.TJ (MSMg01no186_k06.g1)
ACCAG378261AG378262
length984746
length of high quality
(start - end)		90 (122 - 211)303 (76 - 378)
definitionCHROMAT_FILE: MSMg01no186_k06.b1 PHD_FILE: MSMg01no186_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:41 2005CHROMAT_FILE: MSMg01no186_k06.g1 PHD_FILE: MSMg01no186_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTATATGTGTGTGTGGGNTTTGGTTGNNNNNNTGGTGGGGGGTTTG
TTCAATCTCTCGTGGGCNNNNNNNGTTTCTATAAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCC
CATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTC
TTTATATATGTTTGGATATTACCCCCCTATCTGATTTATCATAGTTTAAT
ATCCTTTCTTCATTTGTTTGTGTCTCCTTTTGTCCCTCAGCTCCCTTTGC
GCACTTTTATTTGTACATTTTTCCCTTGTCCTTTTTTATTTTTTTCTTTT
CTACCCTCCTCTCTTTCTTCTACTAAATTACTTATTTTCGCGCTTCTATT
CTCCTCACTCGTGTTTTTTTTTTTTCCGGTTTTTTGTATTTCTTGAGCCC
CGATTTTTTTTTTTTCCCCCCCCCCCCCCTAGTGAATATTTTTTCTACTT
ATTTTTATTTTTGTCCCCCCCGCTGGTGGTGTATAATACTAAGTATTTAT
TTATCGTGTTTTTAGTAACGTTTGCTCCTTCGCCCTTTTTCTTTTTCCAT
TTTTTCTTTATATTATCTTTTTCTGTTTATCATTTCTTCTTATTTCTCTC
CTTTCCTTTGCCTGAATTTTAGTCCTCTTCTTCTTTTTCACTATTTCTTT
CGCTTTTCTCTATTCTCTATTTTCTTCTTCTTATCTTTTTTTTCTTATCT
CGTCACAAACCTCCTCTTATTTTTTTTTAGCATCTCGCGAATGTATAGGT
ATGTTTTTCCTAATCTTTCTCTTTTTTTACTCTTACTAATTCGCTTTTCA
TCTCCTCCTTTTATCTTCTTTATTTTTTATTATTTTTTACGTTTTTATTT
TGTTTGGTTTTATATTTTTTATTTTTCCATTTGTTTTTATTAATTTTTTA
TATTTGTTGCTCCGTGTTTTTTATATGTCTAAAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGCCAGTGTCTCAGAATGGGGAA
GCGCTGAGCTAGCATAGCTGCTGTAGCTACAGCTGCATGGCTGACATTTT
TAGCTTTCCACCCCATTCACACTCTCATTGAGGGCTGCACTCAACCTAGT
ATTCAAGCAGGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAACAA
TGACAAAAGCCCATGCCCTTGAGAATAAGTAATCACAGATTCACTGTCTT
TATCTCACCAACAAGAAAAGCTTGCAGTTTACACAACAAATACTGCATAA
GAGGAAGGAAGGAAAGGTTTCCTGATACCCCTTCAAAAGCTTTCACCATC
CTGATAAGCCCACGAGGCTTCCCCCACCTAGTATAGAAAGGAGCCTCACT
TAAAAGCAAAATTGTGTCTGTGTTGGAACTAACTATGCTTTCTGTCTGGA
ATGTTACTTAAGATTTCCTGTGTCGATCTGTAGGTTTCTGTCCCTCACTC
TCTCTCTCTCTCTTCTCACTTTCACCATGGTAGTTTCTGGCCCATTCTCC
TAATCATAAATTGTACCCGCGATGTTTTCTCTTCCACTATTCTTACCTTT
ATACATTTACATAACCTCTTATTGCTTAAAATACATCCTCATCTTCTCAT
TATTACGAATCTAGAACTGAGATCTTCCTCCAGGTATTATTACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k06.g1 MSMg01no186_k06.g1 CHROMAT_FILE:
MSMg01no186_k06.g1 PHD_FILE: MSMg01no186_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:41 2005
         (303 letters)



>mm_chr18_58612042_58612744
          Length = 703

 Score =  518 bits (268), Expect = e-151
 Identities = 290/302 (96%), Gaps = 8/302 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagccagtgtctcagaatggggaagcgctgagctagcatagctgctgtagctacagctg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 669 atagccagtgtctcagaatggggaagcactgagctagcatagctgctgtagctacagctg 610

                                                                       
Query: 61  catggctgacatttttagctttccaccccattcacactctcattgagggctgcactcaac 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catggctgacatttttaactttccaccccattcacactctcattgagggctgcactcaac 550

                                                                       
Query: 121 ctagtattcaagcaggcaagcaagcaagcaagcaagcaaacaaacaaacaaacaatgaca 180
           |||||||||||||||||||||||||||||||||||        |||||||||||||||||
Sbjct: 549 ctagtattcaagcaggcaagcaagcaagcaagcaa--------acaaacaaacaatgaca 498

                                                                       
Query: 181 aaagcccatgcccttgagaataagtaatcacagattcactgtctttatctcaccaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagcccatgcccttgagaataagtaatcacagattcactgtctttatctcaccaacaag 438

                                                                       
Query: 241 aaaagcttgcagtttacacaacaaatactgcataagaggaaggaaggaaaggtttcctga 300
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 aaaagcttgcagtttacacagcaaatactgcataagaggaaggaaggaaagggttcctga 378

             
Query: 301 ta 302
           ||
Sbjct: 377 ta 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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