BAC Information

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BAC

Clone NameMSMg01-186N10
Chromosome18 (Build37)
Map Location 37,586,469 - 37,586,651
singlet/doubletsinglet
Overlap genenone
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11
Downstream genePcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186N10.T7 (MSMg01no186_n10.b1)MSMg01-186N10.TJ (MSMg01no186_n10.g1)
ACCAG378394
length835955
length of high quality
(start - end)		---183 (130 - 312)
definitionCHROMAT_FILE: MSMg01no186_n10.b1 PHD_FILE: MSMg01no186_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:57 2005CHROMAT_FILE: MSMg01no186_n10.g1 PHD_FILE: MSMg01no186_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTAACGTATTTTAATCCTCNTTAAATTTATATCGCCCCCTCCTCCAGC
CCCCAAAAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAATTACTTTTTTTTTTTTTATCCCCCCCCCCCCCCTAGTTT
TGCTGATTTACTCATTTTTTTTTTTGTGCGNACATCTTCATGAAAAAATN
AAAAATGCTTATCTTATCCAATTACACCAATATAATCTATTTTCCCTTAT
TTACCGCCAATTCAGTTCTCATTTCTTTTTTTTTCATATTTAATTTTTTC
CCTTATTCTCCCTAACTTTTCCTCCCCCTCTTTCCCCAATTCCTCACTCT
TATCCCCCTTTATCCCCTTTTTTATTCTTCCCGCTACATTCTTTCCCCCC
TCTTATATTCCATCTCCTTTCTTATCCTTTCCCTACTTCTCATCATCTTT
ATATCTACCACCACTTTTTACCCTTACTCTCCCCTACACCTCTCCCTATT
CTATTCTTCAACTTTTAATTTAACCCCCATCACTA

CTCTTTTTCTTTCACTCTTTCCCTATCCCACCAACACTTTTTCCNTNTTT
TCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAGTTATCTCATGTCAG
TATGCATTTCATCCACTAGTTTCTCACTTATTTCTGTGAAGTTTTACCAT
TTATATAGTTTTATATAGACATTCTTTGCTAAGGAATTGATTTTCAGTAT
TAAAATTCAATTCTCTTATGAAATTCTCTTTTTATTTATTTGTATAACCA
TCTCTTGTTTTATCACTATTATTTCTTCTTATTTATCGACCTCGCCACAA
GAATAAATCTTTTTAATACCCTTTTTTTTTTTTTTTTCCACATAACCCCA
ACCCCGTTTTAACCCTTTTTTTTTCCCCCCCCCCCCCCCCCCCACCTAAA
TATTATATTTATTATATTTCTTTTTATCCCACCTCTCCCCAAAAAAAAAA
TATTATATTTTTATCTTTTCCCCCGTAATTTTCATATAAACCTCCTTATT
TTTCCCCTATTCTAAACTTTCCTACCCATATTTTCACTCTACATTATTAA
TATACCACCACTTCACCCAAATCATCCCGCCTTCTTTTCCCCTCTCCTTA
TTTATCTCCCCTTTTATCTTTCCTCCACCCTATTCTAATCCCCTACTTTT
TTTTCCGTACCTACATCCATCTTTTTATCATCCCTCTATTTCTCCATTTT
TTTTTTCAACCTTTCTTTTCTTTTAATCCCCTCTCTTTTTTCCACCTCTT
TTTATCTCCCCGCCCTTCACACCCTTTCTCTCTTTTTGCCCTTTTCTATT
TTCGCCCTCCCCGATTTTTCTTTATCCCCTCGATTTTTAACCCTCATTAT
CTCTCCCTTAACCATCTTTTTTTTCCTCCATCTTTTATTCTTTATTTCTC
CTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_n10.g1 MSMg01no186_n10.g1 CHROMAT_FILE:
MSMg01no186_n10.g1 PHD_FILE: MSMg01no186_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:57 2005
         (183 letters)



>mm_chr18_37586269_37586851
          Length = 583

 Score =  286 bits (148), Expect = 4e-82
 Identities = 175/184 (95%), Gaps = 2/184 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttagttatctcatgtcagtatgcatttcatccactagttt-ctcacttatttctgtg 59
           ||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||
Sbjct: 383 attttagttatctcatgtcagtatgcatttcatccacta-tttccttatttatttctgtg 325

                                                                       
Query: 60  aagttttaccatttatatagttttatatagacattctttgctaaggaattgattttcagt 119
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 aagttttagcatttatatagttttatatagacattctttgctaaggaattgactttcagt 265

                                                                       
Query: 120 attaaaattcaattctcttatgaaattctctttttatttatttgtataaccatctcttgt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||
Sbjct: 264 attaaaattcaattctcttatgaaattctctttttatttatttgtataattatttcttgt 205

               
Query: 180 ttta 183
           ||||
Sbjct: 204 ttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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