BAC Information

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BAC

Clone NameMSMg01-186O10
Chromosome18 (Build37)
Map Location 37,586,366 - 37,586,651
singlet/doubletsinglet
Overlap genenone
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11
Downstream genePcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186O10.T7 (MSMg01no186_o10.b1)MSMg01-186O10.TJ (MSMg01no186_o10.g1)
ACCAG378437AG378438
length855783
length of high quality
(start - end)		240 (37 - 276)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no186_o10.b1 PHD_FILE: MSMg01no186_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:02 2005CHROMAT_FILE: MSMg01no186_o10.g1 PHD_FILE: MSMg01no186_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTAACTCTGTACCCCATTTTTAATGGGGTTATTTGGTTTTCTGGAATCC
AACTGCTTGAGTTCTTTATATATATTCGACATTAGTCTCCTATCGGATTA
AGATTGATAAAGATCTTTTCCAAATCTGTTGATGGCCCTTTGTCCTTTGC
CTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATC
TTACTGCACAAGCCATTGCTGTTCTGATCAGGAATTTTCCCCCTGTGTCC
ATATCTTTGAGGTTTTTTTCCTCTTTCACATCAAAATTTTTCACTGTCTT
TTTTTTTTTTTTCCCCCCCCCCCCTTTTTATTATTTATTTTGTTTTATTT
TTTGGGCCCCCCCCCTTTTTAAAAAAAAAAAAAAAGTTTCGCTTGGCGGT
TTTGTATCCTCTTTATCTAATTCATCACCTCTTTTTCTTTTACTACTACT
TTCATTTTTATACCAAGTTCTTATCCCCTTTACTTCTCTTACCTTATCCT
CTCTTTATTTTGTCTTCGTATATCATTTTTTTTTATTAATTATTTTATAT
TATTCAATGTTTTGTTTTACTCTTGCAGACTTCTCATTGTTTTATTCTTC
TTCTCTCCCATACTCTCTAACTCAATATGTTGTCTCTTATCTTTTCCCTT
TTCTACTTCCACTATACATACCTCACACTATCATTCATCGACTTTCTCTT
AACTTTTCTAATTCCTCTAAATCTCATTCATCCATTTTATATTTCATGTC
TCTTTCTTTATTTCATTTTTCTATACTAAACTCCTCATTTATAAATCCCA
ATAAN

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAGTTATCTCATGTCAGTA
TGCATTTCATCCACTAGTTCCTTATTTATTTCTGTGAAGTTTTACCATTT
ATATAGTTTTATATAGACATTCTTTGCTAAGGAATTGATTTTCAGTATTA
AAATTCAATTCTCTTATGAAATTCTCTTTTTATTTATTTGTATAATTATT
TCTTGTTTTAAAACTATTAACTCTTCTTATTTATTGACATTGTTAGTTGA
TTTTAGTATATAGATCTTCTAGGTCAGAAATTTATTTTTTCTCTTCTTGG
CTTTCTTTATATTTTTTTTTTCCCCCCCCCCCCCCACTGATCACTGGAAT
TTATTGTAAATATTTNGCCCCCCCTTGATAAAAAAAAAAATCTTCTGGGG
GGAGCTCGCTCTTTGCTCACACGCCCTTACATCCATATCCTGTGCATCCT
CTATAATCTCACCTAGCGACTGATTCTAATCTTCTTTTTTTTTCTCACAG
TTTGATTATGTAACCTCTTCAATCTGTCTCCCCTGTACCCTCTATAACTT
GTGTCTTACATATATTACTACACACCCTTTCTTACGGTCCCCCATTGTAT
CCTATTTCTTCTTTGTTTTATCTACACCACCCTTTCTTCAGTCTTATTTA
CACAGCGCAGGAATCTCCTTACTTTATTTATTTTATCTTTCCTTCACTAT
TTTCATATTTTGGTACTATTGTTTTGTTAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_o10.g1 MSMg01no186_o10.g1 CHROMAT_FILE:
MSMg01no186_o10.g1 PHD_FILE: MSMg01no186_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:02 2005
         (286 letters)



>mm_chr18_37586166_37586851
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttagttatctcatgtcagtatgcatttcatccactagttccttatttatttctgtga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 486 attttagttatctcatgtcagtatgcatttcatccactatttccttatttatttctgtga 427

                                                                       
Query: 61  agttttaccatttatatagttttatatagacattctttgctaaggaattgattttcagta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 426 agttttagcatttatatagttttatatagacattctttgctaaggaattgactttcagta 367

                                                                       
Query: 121 ttaaaattcaattctcttatgaaattctctttttatttatttgtataattatttcttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttaaaattcaattctcttatgaaattctctttttatttatttgtataattatttcttgtt 307

                                                                       
Query: 181 ttaaaactattaactcttcttatttattgacattgttagttgattttagtatatagatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttaaaactattaactcttcttatttattgacattgttagttgattttagtatatagatct 247

                                                         
Query: 241 tctaggtcagaaatttattttttctcttcttggctttctttatatt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctaggtcagaaatttattttttctcttcttggctttctttatatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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