BAC Information

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BAC

Clone NameMSMg01-186O20
Chromosome18 (Build37)
Map Location 29,788,408 - 29,788,723
singlet/doubletsinglet
Overlap genenone
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186O20.T7 (MSMg01no186_o20.b1)MSMg01-186O20.TJ (MSMg01no186_o20.g1)
ACCAG378454AG378455
length753766
length of high quality
(start - end)
320 (46 - 365)44 (78 - 121)
definitionCHROMAT_FILE: MSMg01no186_o20.b1 PHD_FILE: MSMg01no186_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:04 2005CHROMAT_FILE: MSMg01no186_o20.g1 PHD_FILE: MSMg01no186_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAGTTCAAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACATC
CTGGGATACACAGTGAAATCCTGTCAAAAAAAAAAAAAATTAAAAAAAAA
AAGAAGTGGTCAGTAAGACAAAATGGGTATCCTAATGTATATCCTAAGCA
AATAGAGGCCACAGTAACCAAACAATGTCTTTACCAGGTGCATAGCACAT
CCACTGTACACAAGGAGGGGACAAGGAGAATTGTGCAAGAAGCTAACACT
CTATTCTCCCTGAAATACAGCTAGTGGGATAGCTATTTACACAGGGAGTA
GTCATTATGACAGCTGGTAGTGTGGGTAGCAGGCAAAAATCACATGTTTA
TAATCACCAGACATGGGTGACCTTTCTTCCCTTGATCTTGGTAAAGATAG
GAGACTGGAATAATAAACAATAAAGCCTGTAGTCAGAGAGTATGCATACA
AAACAAACTGAAGTCCTTAGTGGTGTCTTTCTTTGCGACTTGCTGCTTTC
CAGTCTCAAATTAAACTATGAATTCTCCAGGAACTTGAGTGTCACTATGG
ATGTAAAGNTGTGGCTGAGAGCTGTACTGTAAACGCAGACAGCAGGGGAG
CCTCCTTCACGACCTCTGATAACTTTTCTAACCTAATGTAAATTTTTTTA
GGGTAAGGGCCTGGGAGGTTGTGCCTTGTCCGTATACTTCTAAATAAATA
AAG
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGAAGAAAGAGGGAAGCTG
GAAGGGAAGGAGAGGAGTCCAGCAAACTCGTTGGGGTTTTAGATTCAATG
GGTCCCCCCAGTGACCGGGGATTTAGATGAAATAAGTGCCCATGGCAGGG
ATAGGAAAATTCAAGAAGCTTTTAAAGATCAGAGAAAAATAGGACCACTT
AAAAAACTACTCCAGAGTCCAAAAGTTGTAGGGGTAAATGGACCATCTGG
AAGGTGAGAACAGAGGAATAAGCCTGGCCCTGAGAATAGAGACCAGCGGA
GGGAAAAAATCACCAGTATCTTTTTGTTCCTCCGCCACCTCCCCTGGAAA
GTTTTAGATAGATATGCTCCTGAACGCCCCCCGAAAAAAAAGAAATAATA
ATCAGACGCTGGAAGCGAACATGATGTACCTCATCAGACGAATGCTACTC
ACAAATGTGGTACTGTTTACCGTTGGGGAAATAATCGGTTATATACTATA
ACGAGTTTGTGTTATTCCTAGGAAAATGATTGTATCCGGGAGTCATCATT
CTGCTGGAGGATACTCATTCTGTTTAACTCGTCTTTTTGATTTTTACTCT
ATTGTATATTTGTTTTTTTTTCTTCATATCTTTGTTTACTATTTTCATTA
CGAACATTTTTCCCTTCTTTGTTGTCTCCTATCTCATATACCTCTACCTT
TATTATATACTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_o20.b1 MSMg01no186_o20.b1 CHROMAT_FILE:
MSMg01no186_o20.b1 PHD_FILE: MSMg01no186_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:04 2005
         (320 letters)



>mm_chr18_29788204_29788923
          Length = 720

 Score =  567 bits (293), Expect = e-166
 Identities = 311/319 (97%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgagttcaaggccaacctggtctacagagtgagttccaggacatcctgggata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 ggaattctgagttcaaggccaacctggtctacagagtgagttccaggacatcccgggata 264

                                                                       
Query: 64  cacagtgaaatcctgtcaaaaaaaaaaaaaattaaaaaaaaaaa--gaagtggtcagtaa 121
           ||||||||||||||||||||||||||||   |||||||||||||  ||||||||||||||
Sbjct: 265 cacagtgaaatcctgtcaaaaaaaaaaa---ttaaaaaaaaaaaaagaagtggtcagtaa 321

                                                                       
Query: 122 gacaaaatgggtatcctaatgtatatcctaagcaaatagaggccacagtaaccaaacaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gacaaaatgggtatcctaatgtatatcctaagcaaatagaggccacagtaaccaaacaat 381

                                                                       
Query: 182 gtctttaccaggtgcatagcacatccactgtacacaaggaggggacaaggagaattgtgc 241
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtctttaccaagtgcatagcacatccactgtacacaaggaggggacaaggagaattgtgc 441

                                                                       
Query: 242 aagaagctaacactctattctccctgaaatacagctagtgggatagctatttacacaggg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 aagaagctaacactctattctccctgaaatacagctagtgggatagctattcacacaggg 501

                              
Query: 302 agtagtcattatgacagct 320
           |||||||||||||||||||
Sbjct: 502 agtagtcattatgacagct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)