BAC Information

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BAC

Clone NameMSMg01-188C08
Chromosome18 (Build37)
Map Location 72,891,352 - 72,891,636
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684
Downstream geneLOC100043411, LOC100042955, Rkhd2, Smad4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188C08.T7 (MSMg01no188_c08.b1)MSMg01-188C08.TJ (MSMg01no188_c08.g1)
ACCAG379259AG379260
length772719
length of high quality
(start - end)
317 (60 - 376)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no188_c08.b1 PHD_FILE: MSMg01no188_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:41 2005CHROMAT_FILE: MSMg01no188_c08.g1 PHD_FILE: MSMg01no188_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATCTTCAGGCATTAGAAAATTTATCACTCTT
AAAATGTTCATAGTACCTAAACAACTTATCAAACATTCTGTTGACCGTTT
TCCTAGAAATAAAAAGAATAAACCTGAATTTCATATACAATTCTGAATAG
CCACAGGATATGAATAGTCAGTACCGATCGTGTTCCTAATTTTAAATGAC
ATTGCAGAGATTCAGTAATCAACTCAATTCACATTGACATAAGACACAGA
GACAAATTATACATAAATTTAAAAAACCAAATAAATACTCGCATTTATAA
TTAAGTGTTATTTGAGAAAGATTCCTATATTATTATGCACCCCTACTCTC
AGAACTGAATTGTACTTAAGATTGGATCGCCCCCTATGTGTTAAGTGAAA
CATTTTTATAGCCCAATTCCTATAACAATAAATAATTTGAAAAAATTAAA
GGGTTCAAAGTTAACTTAATGTGAATTTTTTTGGAAAATCCCCATGTCTC
CAAATTCCTTAATTATTTTTTCCCAAAGCATATTTTTGTTTATAAAAAAA
TTACGCTATAAAAATTTTTTTGTCTCTTTTTATTTTTTATCTTTAATTGT
GTATAAAGTTTTCTACTTATTGGTGGTATTACCAAATATTTTGTACGAGT
AACACCCATAGCCCAATTATATTATAATACCTCTTATATACAATCTGGGC
TGCTCGCCCCACCCGATTATAG
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGATTTGCTCTTTACAGTGTTGAA
TTCCTATAATTCTTACAAGAACCTATAGTTGTTGAATTAATTCTGTTTGT
ACTTTGACAATTCCATGTGTTTATGTAGTACATTCTGATTTTTTTCTCTC
TGCCATCCTCACACTTCCTTACCCATCCCTATCAAATCCTTCCTAGAAGC
CCCTTTTCTGTTCTTAACTTGTAGGTTTGTTTTGTGACCAGGTTAGTTTC
ATCTACAGTAAATGAACTTGTCATTATAAATGATCAGATCTATAACGAAG
GGGAAGAGAGGCCTTATTTCTACGCCTGCGGTGCACTCACCTTCCTGGTG
TCTCTATTGTCTACTGAAACCAAATGGAATCCCAGGAGCTTCCAGCTGTT
GCTGCTGTCTCTAACTGAAGCTGTATGTGAGAAGTGTCTTAAATTAAACA
GGAAAAATCTTTTCCCATTTCAATTTCCTTGTTGTCTCTAACTTAAATGG
TAGAGTCTTAGACACATATAGTAATATAATTTTACAGCTGAGGGTCCTTT
CTGTAACCAGTATATGAATCCCTTCTCTTTCTCTTCCCCCTCCTTTCTTC
CTTCCCACCCCTTCTGTCTGTCTCTATCTGTTTCCGTCCTCTGTCCCTGT
CTCTCTGCCTCTGTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_c08.g1 MSMg01no188_c08.g1 CHROMAT_FILE:
MSMg01no188_c08.g1 PHD_FILE: MSMg01no188_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:42 2005
         (285 letters)



>mm_chr18_72891152_72891836
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatttgctctttacagtgttgaattcctataattcttacaagaacctatagttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagatttgctctttacagtgttgaattcctataattcttacaagaacctatagttgttg 260

                                                                       
Query: 61  aattaattctgtttgtactttgacaattccatgtgtttatgtagtacattctgatttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaattctgtttgtactttgacaattccatgtgtttatgtagtacattctgatttttt 320

                                                                       
Query: 121 tctctctgccatcctcacacttccttacccatccctatcaaatccttcctagaagcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctctgccatcctcacacttccttacccatccctatcaaatccttcctagaagcccct 380

                                                                       
Query: 181 tttctgttcttaacttgtaggtttgttttgtgaccaggttagtttcatctacagtaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tttctgttcttaacttgtaggtttgttttgtgaccaggttagtttcatctacagtaattg 440

                                                        
Query: 241 aacttgtcattataaatgatcagatctataacgaaggggaagaga 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttgtcattataaatgatcagatctataacgaaggggaagaga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)