BAC Information

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BAC

Clone NameMSMg01-189F07
Chromosome18 (Build37)
Map Location 31,434,775 - 31,435,084
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F07.T7 (MSMg01no189_f07.b1)MSMg01-189F07.TJ (MSMg01no189_f07.g1)
ACCAG380052AG380053
length732780
length of high quality
(start - end)
314 (46 - 359)239 (184 - 422)
definitionCHROMAT_FILE: MSMg01no189_f07.b1 PHD_FILE: MSMg01no189_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:17 2005CHROMAT_FILE: MSMg01no189_f07.g1 PHD_FILE: MSMg01no189_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAACACAATGAATAGATTCAGTTGAAAAATGTCAGAGCAACCT
TTTTATGGAATGATAATACCGTGAGAAACACAGTAACCCCGTCAGTTATC
TGTCTATTGTGGATCTATCTGGGTGTTGTGGCAACAGTCACAAGCTTCTC
ACAGATCCAAGCAAGCTCCTTATTTTCAGCTCCCTTTCTTCCTAATCCTG
TACAGAACATGAGCCAGAAACAAAGTAGCCCAGAAACAGGAAGGAATGTT
AGTTTTTGGACAGTTTGTGTTTCCCAGTTCTCTAAGAAGTGTTTCTAATC
TGGGGGCTATTTTTACCGCCCCGCCCTCTCTGAAATTGAAAGTAAATACT
TTCAAAGTCCTGAGCACCCATTTATTTTTCATGCTCTTGTGTTAGCCCTT
AAGTGTCACTGACCACTGTGGGTTTAATTCTAAAGTATGCTTTTCTTTTC
CCCAAGTCTGCTACTCTGACTTTTTTTTTATTATCTCTGGATCTGACAAA
GTAAATACAGCTATATCATGGGTTCTCAGTTCAGAGGTCTTAAATGTAAG
TGGAACAAAAAAGAAAGACTTTTATTTGTATTGAAATAATCCCTTTCCAT
TATTAATATACTCTGCAAATAGGGTCTGTTGACACTAATCTGCTGGTTTT
CACCAATAGAAATGACAGTTTCTCCCAGACTA
CTTTTTCGCTTCCCCTTTTTTTTTTTCTCTTTTTTCTATTTCCTTACNNT
NNCTTATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATG
TCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCTTGTTCATATATCCAGAAGATGCCCCAAC
AGGTAAGAAGGACACATGCTCCACTATGTTCATAGAAGAAATATTTATAA
TAGCCAGAAGCTGGAAAGAACCTATATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGTTACATCTACACCATGTAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAACTCCTAGCTCAATGTATGGACCTGAAGGGTTTCA
TCCTTGATGAGGTATAACTTTCACAAAGGAACTCACATAATAAGTTTTCA
CTGATATGTGCAAATTACCCCATATCCTACGATTTTCTTGATATAAGATT
CACTTTCCTAAACTCTTGAAAATTTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f07.b1 MSMg01no189_f07.b1 CHROMAT_FILE:
MSMg01no189_f07.b1 PHD_FILE: MSMg01no189_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:17 2005
         (314 letters)



>mm_chr18_31434571_31435284
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaacacaatgaatagattcagttgaaaaatgtcagagcaacctttttatgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaacacaatgaatagattcagttgaaaaatgtcagagcaacctttttatgga 264

                                                                       
Query: 65  atgataataccgtgagaaacacagtaaccccgtcagttatctgtctattgtggatctatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgataataccgtgagaaacacagtaaccccgtcagttatctgtctattgtggatctatc 324

                                                                       
Query: 125 tgggtgttgtggcaacagtcacaagcttctcacagatccaagcaagctccttattttcag 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tgggtgttgtggcaacagtcacaagcttctcacatatccaagcaagctccttattttcag 384

                                                                       
Query: 185 ctccctttcttcctaatcctgtacagaacatgagccagaaacaaagtagcccagaaacag 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctccctttcttcctaaccctgtacagaacatgagccagaaacaaagtagcccagaaacag 444

                                                                       
Query: 245 gaaggaatgttagtttttggacagtttgtgtttcccagttctctaagaagtgtttctaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaggaatgttagtttttggacagtttgtgtttcccagttctctaagaagtgtttctaat 504

                     
Query: 305 ctgggggcta 314
           ||||||||||
Sbjct: 505 ctgggggcta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)