BAC Information

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BAC

Clone NameMSMg01-189H04
Chromosome18 (Build37)
Map Location 48,209,855 - 48,227,200
singlet/doubletdoublet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182
Downstream geneLOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189H04.T7 (MSMg01no189_h04.b1)MSMg01-189H04.TJ (MSMg01no189_h04.g1)
ACCAG380131AG380132
length716740
length of high quality
(start - end)
641 (46 - 686)243 (464 - 706)
definitionCHROMAT_FILE: MSMg01no189_h04.b1 PHD_FILE: MSMg01no189_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:26 2005CHROMAT_FILE: MSMg01no189_h04.g1 PHD_FILE: MSMg01no189_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,209,855 - 48,210,490)(48,226,958 - 48,227,200)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTGAACAAAATAACGGAGGCTATCTCTGTAACTTTGTAAGCAGTTCCA
GAAATGGTGTCTTAAGAGAAACCCGACCATTTCATGAATTCATGGGGCAC
TTTGAGGGGGGAAATGCATGTCCTTTTACCCAATTATTGCCAACACAATT
AATGATGTTTTGCTTTTGTGTGCAGCTATAATTGCATTGTTACCTGAGTA
AAATTTTAGTTTGTATTCATTTGCATTGGAGATTTGGGATCTGAAATTTC
CGGAGGGAATTACAAATGATATCAAAGCAGGGTGTGCGGCTTAAGTGAAA
ACATCGGAGCTTCTGGTTCCTCTTGTGCTTTCAATGTCTTTTCATCTCCA
TGACACGTTACGAATATCTGGCCTTTGTTCTGCGTCCTTGCCAACTTCTT
CTGAACACATAGAATCCATCTCTCTCTACACCATGGGGCTAAAACTGCCG
TCAAACCAGGTCAGTTCATTTCTGAGCATAAAAATGTTTCTAAGGCCTTC
TATTTTTAAGATCTTTTACATTTTTTATTTTAAGATTAATAGTGTCTTCT
ATTTCAAAATACGTCTCACCTCAGTTTTTGGTTCTTTCTTATCAAGACTT
TTCTTTCTTCATGTCACCTGTCCATTTCCTTTGCTTGTCCCACTTCAGTA
TTTCTGTGGTGACACC
NNNNTTAGTAAGTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAAAATTCACCCTGTTTTAGA
ATGATGGGTTGCTCTATGCTACAACGAGTTTAAGCGAAAAATAAAAAATG
GATGTATGAAGTTTGGAAACAAATTTGGGGAAGGATGTTAGAAGAGGAGC
AAATATAGAGTTCTTCCTCAGGGATACAACAGACCCCATGTGGCACTGAC
CAATCTACATGGGCAGTGTGTTATTTAGAATGACAGAAGTGGGCAGCCCT
GTCAGAGACATGGCAGAAAGGGACTCAGGGAATTTTTTTAAAAGAGGACT
TTCATACTATTCTGTCCATTATTTTTTTATAGCCCCACCCACCATATTTG
TTATTTACTGTGATAATGAAAATATAAGGAGAGAGAAAAGAAAAGAATAG
ATTTTAAGAAGATTTTGATAAACTGTAGTCTATTAAAACATTATTCATAT
TTGGTACTGTCCTATAGATGTCTGGGCTATTCTAAATGTTTGCCATCCAA
TATCATTACAACTAGCCACTATGGCTTCCCTGAAGTAGATATGTGCCTGT
AACTACAGAATTGAATGTTTATTTGATTGCCCACACATGTTTCACGACTA
CCACATTAGTCATTATAATTATATAAATACATAAATAGCTTCAAAACTTA
TAGCATTGGACATGGTAGGTTTTTTTTTTTCTCCCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_h04.b1 MSMg01no189_h04.b1 CHROMAT_FILE:
MSMg01no189_h04.b1 PHD_FILE: MSMg01no189_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
         (641 letters)



>mm_chr18_48209650_48210690
          Length = 1041

 Score = 1183 bits (612), Expect = 0.0
 Identities = 630/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattgaacaaaataacggaggctatctctgtaactttgtaagcagttccagaaatggtgt 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattgaacaaaataaaggaggctatctctgtaactttgtaagcagttccagaaatggtgt 265

                                                                       
Query: 66  cttaagagaaacccgaccatttcatgaattcatggggcactttgaggggggaaatgcatg 125
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttaagagaaaccagaccatttcatgaattcatggggcactttgaggggggaaatgcatg 325

                                                                       
Query: 126 tccttttacccaattattgccaacacaattaatgatgttttgcttttgtgtgcagctata 185
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 326 tccttttacccaattattgccaacataattaatgatgttttgcttttgtgtgcagctata 385

                                                                       
Query: 186 attgcattgttacctgagtaaaattttagtttgtattcatttgcattggagatttgggat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attgcattgttacctgagtaaaattttagtttgtattcatttgcattggagatttgggat 445

                                                                       
Query: 246 ctgaaatttccggagggaattacaaatgatatcaaagcagggtgtgcggcttaagtgaaa 305
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 446 ctgaaatttccggagggaattacaaatgatatcaaagcagggtgtgtggcttaagtgaaa 505

                                                                       
Query: 306 acatcggagcttctggttcctcttgtgctttcaatgtcttttcatctccatgacacgtta 365
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acatcggagcttctggctcctcttgtgctttcaatgtcttttcatctccatgacacgtta 565

                                                                       
Query: 366 cgaatatctggcctttgttctgcgtccttgccaacttcttctgaacacatagaatccatc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cgaatatctggcctttgttctgcgtccttgccaacttcttctgaacacatagaatccatc 625

                                                                       
Query: 426 tctctctacaccatggggctaaaactgccgtcaaaccaggtcagttcatttctgagcata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctctctacaccatggggctaaaactgccgtcaaaccaggtcagttcatttctgagcata 685

                                                                       
Query: 486 aaaatgtttctaaggccttctatttttaagatcttttacattttttattttaagattaat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaatgtttctaaggccttctatttttaagatcttttacattttttattttaagattaat 745

                                                                       
Query: 546 agtgtcttctatttcaaaatacgtctcacctcagtttttggttctttcttatcaagactt 605
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 746 agtgtcttctatttcaaaatacgtctcacctcagttcttggttctttcttatcaagactt 805

                                               
Query: 606 ttctttcttcatgtcacctgtccatttcctttgctt 641
           ||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttctttcttcatgtcacctgtccatttcctttgctt 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_h04.g1 MSMg01no189_h04.g1 CHROMAT_FILE:
MSMg01no189_h04.g1 PHD_FILE: MSMg01no189_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:26 2005
         (243 letters)



>mm_chr18_48226758_48227400
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgataaactgtagtctattaaaacattattcatatttggtactgtcctatagatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttgataaactgtagtctattaaaacattattcatatttggtactgtcctatagatgtct 384

                                                                       
Query: 61  gggctattctaaatgtttgccatccaatatcattacaactagccactatggcttccctga 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggctattctaaatgcttgccatccaatatcattacaactagccactatggcttccctga 324

                                                                       
Query: 121 agtagatatgtgcctgtaactacagaattgaatgtttatttgattgcccacacatgtttc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtagatatgtgcctgtaactatagaattgaatgtttatttgattgcccacacatgtttc 264

                                                                       
Query: 181 acgactaccacattagtcattataattatataaatacataaatagcttcaaaacttatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acgactaccacattagtcattataattatataaatacataaatagcttcaaaacttatag 204

              
Query: 241 cat 243
           |||
Sbjct: 203 cat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)