Query= MSMg01no189_n05.b1 MSMg01no189_n05.b1 CHROMAT_FILE:
MSMg01no189_n05.b1 PHD_FILE: MSMg01no189_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:54 2005
(312 letters)
>mm_chr18_13526004_13526715
Length = 712
Score = 522 bits (270), Expect = e-152
Identities = 300/310 (96%), Gaps = 4/310 (1%)
Strand = Plus / Minus
Query: 5 gaattctttgccagacattaataacattcactgtnggcttttcaacataaatcaaaagca 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 512 gaattctttgccagacattaataacattcactgt-ggcttttcaacataaatcaaaagca 454
Query: 65 atttctggttaaacagcctgaactgtatttagatacagcacttttattattctctgattg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atttctggttaaacagcctgaactgtatttagatacagcacttttattattctctgattg 394
Query: 125 ctgtctgtaccttgatgtcaaatcgctttt-atagcctctggacatcaaaaaa-tctctc 182
|||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||
Sbjct: 393 ctgtctgtaccttgatgtcaaatcgcttttca-agcctctggatatcaaaaaaatctctc 335
Query: 183 agattagtagtcatttctaggcctacatgctcagaacatggtagcctaatattattaaca 242
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 334 agattactagtcatttctaggcctacatgctcagaacatggtaacctaatattatgaaca 275
Query: 243 agctctgcttcacaattccattgtcacgcatgtaagctgacccaccctgccttccccgag 302
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 274 agctctgcttcacaattccattgtcatgcatgtaagctgacccaccctgccttccctgag 215
Query: 303 gcaatgaact 312
||||||||||
Sbjct: 214 gcaatgaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_n05.g1 MSMg01no189_n05.g1 CHROMAT_FILE:
MSMg01no189_n05.g1 PHD_FILE: MSMg01no189_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:54 2005
(291 letters)
>mm_chr18_13422851_13423540
Length = 690
Score = 478 bits (247), Expect = e-139
Identities = 280/291 (96%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 1 acatttgcagtaggcctactgggtgacaaaaatgaaggacactatcctctcaacagcgca 60
|||||||| |||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 201 acatttgctgtaggcctactgggtgacaaaaatgaaggacactat-ctttgaacagcgca 259
Query: 61 aggtaggaaaaagctgtagttgtagagaaccagggggaagatcccgaatgattcctctta 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 260 aggtaggaaaaagctgtagttgtagagaaccagggggaagatccagaatgcttcctctca 319
Query: 121 aacatggaaggctgtaatatgccttcttgggataatgattttgagtttttatataattgc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 aacatggaaggctgtaatatgccttcttgggataatgattttgagttttcatataattgc 379
Query: 181 acactagctttgtaaaatcatacaaaaactaaaaaaaatataccatgtaatactttgtat 240
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 acgctagctttgtaaaatcatacaaaaactaaaaaagatataccatgtaatactttgtat 439
Query: 241 aaaaaaaggtgttaatatcttccatgtctatatatgtatagctgatgtgaa 291
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaaaaaggtgttaatgtcttccatgtctatatatgtatagctgatgtgaa 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space: 192042
Effective search space used: 192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
