BAC Information

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BAC

Clone NameMSMg01-190D24
Chromosome18 (Build37)
Map Location 7,288,869 - 7,289,158
singlet/doubletsinglet
Overlap geneArmc4
Upstream geneEG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778
Downstream geneMpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190D24.T7 (MSMg01no190_d24.b1)MSMg01-190D24.TJ (MSMg01no190_d24.g1)
ACCAG380660AG380661
length709699
length of high quality
(start - end)
314 (36 - 349)292 (57 - 348)
definitionCHROMAT_FILE: MSMg01no190_d24.b1 PHD_FILE: MSMg01no190_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:26 2005CHROMAT_FILE: MSMg01no190_d24.g1 PHD_FILE: MSMg01no190_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTTCCAGAACTTTTATCATGAATGGGCGTTGGATCTTGTCAAATGCTTT
TTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAATGGATTACATTGATGGATTTTCGTATACTAAACCATCCCTGCATC
CCTGCAATAAAACCTACTTGGTTAGGATGGATGATTGCTTTAATGTGTTC
TTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGAGATTCA
TAAGAGAAACTGGTCGGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGT
TTATTTTATTTTACCCCCCCCCCCTTCTTAAAATGAGTTGGGTAGAGTAC
CTTCTACTTCTGTCTTGTGAAAAAGATTGTGCATAACTGGGATTACATCT
TCTTTGAAGGTCTGATATAACTCTGCACTAAATCCGTCTGGACCTGGTCT
TTTTTTGGCTGGAAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATA
TGGGACTGGTTATACGTTCAACTTGATACTGACTCAACTTTGTTACCTGG
TATCTGTTCCGAACTTTGTTCATTTCACCAAAGTTTTTCAGTTTTGTTGA
GTATAGTCTTTTGTAAAACGATCTGATGGTGTTTCGCAATTCTTCAGGAT
CAGCCGCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTTTGAACTCAATTAGTCACAGCTTCAGGTTTCTCTAAGGGTT
TCTGGTGTCTTTTCAAAAGATGGATGAAAGTTCAACAGGGCAGTCAAACT
CGGTATCCAACCTTACTCTATTTTACCCCACCGTGCTTAGTGGTTAGTAA
TTAGTGGGTTCTCATCTACTTTGTGCTTACAAACAGAAAGGCGAACTAGA
ACCTTCTGTGGATTATCTCCACACTCTAAACATCTTAAGTCAGTTTCTTT
TGCTCTTATCTTCTTAACCAAATTTTCTAAATTGCCTTTCCTTGATTTTT
TTTATCCCCCCTCCCACCTTTTTGATTTTAGCGTTTTTACCTATTTTTAG
NACTTGATTATGAAAGATTATTTTTTAGGCTAGAATTTAAGTATTTTAAG
AGTTTCTTGAGAGTGACATTGATATAAATTTCTATCAGCTACAACATAAA
TTAAATACGTTGTCTTTAAATTAGCTATTGCTTACATTATTTTATTATGT
AATTATATTCCTGAGAGGGCCGCTTTGCATGTGAAAAGCCCGCAGTATAT
TCTAAGTTGCAATGTACGGGAACAGATATGGAACTCTCCTCGATATTACC
CATGAAGAAATATTCTGACCGATCATGGGTTTTAGCTCCCGTCCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_d24.g1 MSMg01no190_d24.g1 CHROMAT_FILE:
MSMg01no190_d24.g1 PHD_FILE: MSMg01no190_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:26 2005
         (292 letters)



>mm_chr18_7288669_7289360
          Length = 692

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgaactcaattagtcacagcttcaggtttctctaagggtttctggtgtcttttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgaactcaattagtcacagcttcaggtttctctaagggtttctggtgtcttttcaa 260

                                                                       
Query: 61  aagatggatgaaagttcaacagggcagtcaaactcggtatccaaccttactctattttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatggatgaaagttcaacagggcagtcaaactcggtatccaaccttactctattttac 320

                                                                       
Query: 121 cccaccgtgcttagtggttagtaattagtgggttctcatctactttgtgcttacaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaccgtgcttagtggttagtaattagtgggttctcatctactttgtgcttacaaacag 380

                                                                       
Query: 181 aaaggcgaactagaaccttctgtggattatctccacactctaaacatcttaagtcagttt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggcaaactagaaccttctgtggattatctccacactctaaacatcttaagtcagttt 440

                                                             
Query: 241 cttttgctcttatcttcttaaccaaattttctaaattgcctttccttgat 290
           |||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 441 cttttgctcttaacatcataaccaaattttctaaattgcctttccttgat 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)