BAC Information

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BAC

Clone NameMSMg01-190N21
Chromosome18 (Build37)
Map Location 23,434,260 - 23,434,549
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546708, LOC100040547, Asxl3, Nol4, LOC100040579, LOC665797
Downstream geneDtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190N21.T7 (MSMg01no190_n21.b1)MSMg01-190N21.TJ (MSMg01no190_n21.g1)
ACCAG381069AG381070
length689732
length of high quality
(start - end)
313 (45 - 357)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no190_n21.b1 PHD_FILE: MSMg01no190_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:16 2005CHROMAT_FILE: MSMg01no190_n21.g1 PHD_FILE: MSMg01no190_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGATCTTTCCAAGACTTTTATTATGAAGGGGTGTTGGATTTTGTC
AAATGCTTTCTCAGCACCTAATGAAATGATCATGTGATTTTCTTCTTTGA
GTTTGTTTATATAGTGGATTATATTGAGTATTTTCGCATCAATATTCATA
AGGGAAATTTATCCTAAATTCTCTTTCTTTGTTGGGACTTTGTGTGGTTT
AGGGATCAGAGTAATCGTGGCTTCATAGAATGAATTGGGTAGTGTTCCTT
CTGTTTCTATTTTCAGAAATAGTTTGAAGAGTATTGGTATTAGGTCTTCT
TTGAATTTCTTGTACAACTCTGACATAACCCCATCTGGTCCTGGGCATTT
TAAGTTGGGAGACTATTAATTACTGCTTCTATTTCTTTAGGGGTTATGGT
ACTGTTTAGATCATTTATCTGATCCTGATTTAACTTTGGTATTTGGTATC
TGTCTAGAAAATTGCCTATTTCCTCCAGATTTTCCAGTTTTGTTGACTAT
AGGCTTTTGTAGTAGGACCTGATGAATTTTTTGAATTTCCTCGGTTTCTG
TTGTTATGTCTTGCTCTTTATTTCTGATTTTATTAACTAGGATACTGTCT
CTGTGCCCTCTGGTTAGTCTGGCTAAAGGTTTATCTATN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTATGCATGTAGGGTGAGAGATC
AGGTTTATATATAACACTCTGAGATAAAAATAAAAAAGAAATCACAGCGC
AGGTATTATTAAAATGAAAGGAATATATTAAGGTGTACTGTTCTGGTAAA
ACAGGAAATTCTACAAAGGAATGGAATATATTAAGAAACACATACCCAAC
TATGAAGCAGTCACTTGCCATTAGAGAAAGAAGGCTTTCAAGGTTAAAAC
TCTCTTTTGTTGTTTATTATTAATTTAAATTTCTCTGTTCAGAGTTATTT
TGAGTGCTTATTTTGTATTTTTTACCACCCCCCTCCAATTATTTCAAATC
AGTGGTTCTACTGTATTAAGCTTATGTGTATTGAATAATGAAATCATAAG
CTATCACTATATGATGATGATTAGGCCATAATATATAAATTGTTTTCTTG
GCTCAACTGAGCACATGAACAACAATAAGACCATGCTTTAAAATTCCAGA
ACCCTGTTTTGCCTCTCAAATGAAGAGCAAACAATATAGTCAGAGAAAGC
ATACATGTGGCAATCGTTTTCAAATCTTAAACTCACATAATTCTCAATAT
AAAAATCTTAAGAATCTTTCTTAGGATGGACCATCTAGAGACTGCCATAT
CCGGNGACCATCCCATAATCAGTCCCCAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_n21.g1 MSMg01no190_n21.g1 CHROMAT_FILE:
MSMg01no190_n21.g1 PHD_FILE: MSMg01no190_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:16 2005
         (294 letters)



>mm_chr18_23434060_23434753
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttatgcatgtagggtgagagatcaggtttatatataacactctgagataaaaataaaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 490 agttatgcatgtagggtgagagatcaggtttatatatagcactctgagataaaaataaaa 431

                                                                       
Query: 61  aagaaatcacagcgcaggtattattaaaatgaaaggaatatattaaggtgtactgttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagaaatcacagcgcaggtattattaaaatgaaaggaatatattaaggtgtactgttctg 371

                                                                       
Query: 121 gtaaaacaggaaattctacaaaggaatggaatatattaagaaacacatacccaactatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtaaaacaggaaattctacaaaggaatggaatatattaagaaacacatacccaactatga 311

                                                                       
Query: 181 agcagtcacttgccattagagaaagaaggctttcaaggttaaaactctcttttgttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcagtcacttgccattagagaaagaaggctttcaaggttaaaactctcttttgttgttt 251

                                                             
Query: 241 attattaatttaaatttctctgttcagagttattttgagtgcttattttg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attattaatttaaatttctctgttcagagttattttgagtgcttattttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)