BAC Information

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BAC

Clone NameMSMg01-191B17
Chromosome18 (Build37)
Map Location 48,726,231 - 48,726,541
singlet/doubletsinglet
Overlap genenone
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
Downstream geneLOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B17.T7 (MSMg01no191_b17.b1)MSMg01-191B17.TJ (MSMg01no191_b17.g1)
ACCAG381235AG381236
length709736
length of high quality
(start - end)
315 (46 - 360)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no191_b17.b1 PHD_FILE: MSMg01no191_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:35 2005CHROMAT_FILE: MSMg01no191_b17.g1 PHD_FILE: MSMg01no191_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATTAATACTTCCATGAACATATATTTAAACAAAGCAGTTGTG
AGGCATAAACATTATCCTTTGGTTTCTGACTTCCCATGTAGGAAATACAC
ATCATTTCTTATAAAGTCTTAAAAGCTGTAATCAAGTGCAAACCTCCATG
TTTGCAGCTCCACAGTGAACACTTTTTACTATTTAAAAATCAAGAAAGAT
TGACTGCCTAATTTTGCAGCTGAAATTATTCGGAGCTAAGCTTATACAAA
TCCTCATCTGCAGCAAAACATGACTTTGTAAGTTTCAAGAAGATATTCAA
ATTTCAGCATGATTGTTATTTTGCCACCACTGGTTACAGCCTTTAGAATT
TGAAAGTTTTTCCATAGAATCTATGATTTCCTATACATATGAAGCTCCTG
GTTCTCTCTGTAAATTTAGAACAATGTTGGAACTGTGCCCAGATCTGTAA
GGACCCATATCTAAGATGGTGCAGTCCTGAAAGAAGTATACATTTCTCTG
TATAATAGCTCTGCCTTGAGCTAAAAATCAATACATGATTATTCTATCTT
TAGATTATTTATTATTATTCTAAAAGGAACAGTAAAAATATTTTGCTGCT
GTATGAGCAATGGTTTTTATAGCAACGTTTATATCTTAAAATCATTCATC
CCGTTAAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCATTAATATGAGTTCCCAGTT
CACTTCCTCCATTCCAATACAGTTTAGAATCCCCTGTTATAGTTAACAGG
CTCCACATACATCTGGAAAATCTTTTTAACCAACTAATCTTTTATATACA
GGTTTAGAAAAATCCATTATTTAGACTTCTTTTCTAGTCAAGTTAACAAT
CAAAAATAAGTCTCAGTAGTTGATAATGTCAACATGATAATGTCACATGA
AATACCACACAAAGGGTCTTTCCCATACAAAAAAAAGTGATCTAGATCAA
GACATATTTTTTTTTTAACTGCGCCCGCACACTCAGCCTTACACCAATTC
TTTGTTTTCTATCAAAGATATTCTTAGAAAGTTTTGAAAGTATCTTTCCT
AACAAAATAATCCCATTGATAAACTCAAGATGGGAATTGGAAGCAGGAGA
AATATGGGTTCAAGGCTAGTTCAGGCTACAAAGTCCTCAAAAATAAAACC
AAAAAATCTCAGCTGTTACCAAGGCATAGTTATCCCTTACTTCAAGTTTT
GTGGTGATTAATCTTGAAGCTCATCATTGAATAAGTGACCAGCCATCAAT
ATAGGTATTCATTGGTGAGTCATGATCATAAGCAAAAATACATGAGATGA
TTTTCTCCTTGTGTGAAATATTAAGCAGCTAGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b17.b1 MSMg01no191_b17.b1 CHROMAT_FILE:
MSMg01no191_b17.b1 PHD_FILE: MSMg01no191_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:35 2005
         (315 letters)



>mm_chr18_48726027_48726741
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtattaatacttccatgaacatatatttaaacaaagcagttgtgaggcataaa 64
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 515 gaattctgtattaatacttccatgaacacatatttaaacaaagcagtcgtgaggcataaa 456

                                                                       
Query: 65  cattatcctttggtttctgacttcccatgtaggaaatacacatcatttcttataaagtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cattatcctttggtttctgacttcccatgtaggaaatacacatcatttcttataaagtct 396

                                                                       
Query: 125 taaaagctgtaatcaagtgcaaacctccatgtttgcagctccacagtgaacactttttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taaaagctgtaatcaagtgcaaacctccatgtttgcagctccacagtgaacactttttac 336

                                                                       
Query: 185 tatttaaaaatcaagaaagattgactgcctaattttgcagctgaaattattcggagctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatttaaaaatcaagaaagattgactgcctaattttgcagctgaaattattcggagctaa 276

                                                                       
Query: 245 gcttatacaaatcctcatctgcagcaaaacatgactttgtaagtttcaagaagatattca 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctcatacaaatcctcatctgcagcaaaacatgactttgtaagtttcaagaagatattca 216

                      
Query: 305 aatttcagcat 315
           |||||||||||
Sbjct: 215 aatttcagcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)