BAC Information

Click to search

BAC

Clone NameMSMg01-191D23
Chromosome18 (Build37)
Map Location 57,005,331 - 57,005,641
singlet/doubletsinglet
Overlap geneMarch3
Upstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191D23.T7 (MSMg01no191_d23.b1)MSMg01-191D23.TJ (MSMg01no191_d23.g1)
ACCAG381331AG381332
length710747
length of high quality
(start - end)
314 (44 - 357)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no191_d23.b1 PHD_FILE: MSMg01no191_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:47 2005CHROMAT_FILE: MSMg01no191_d23.g1 PHD_FILE: MSMg01no191_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACATTACGCTGAGACTATGCTGTTTGTACAGTATGTTTGTGAAGGA
GAACGAGGGAAACTTAAGGTCCCCTTGGTCGTGAAGATTCTGTCTCCTTT
CCCTATGCCCACTACAGAGTCTTGCTGGAGAAAAGTGAAACATAGGCTGT
TGCAACTATTTGTCTGGTAAATTCTGTATGCCTCTTANAAAGTAAAGAAC
CTAGATTACAGTTTGACCAAGACTCAANAGCCTACAGAAGAAATACTAAA
CAATGGAGAAAAATGTGCAAGGACCTTGAATGGGAACAGTAAGGGGCAGT
GCCTTACATTTATTGCTATCAAACCTGNCCAATCACCTNNTTGGCCAGTT
ATGTCAAATATCACCCTACACCAAAGAAAAAAAAAAANCCCCCGGGGGGG
GGTTTCATATAACACCCCTCTCCCTCCTGCGGGCNACCCCNCCCNAAAAC
AAATATAAATNCNCTCAATGNATAAAGGGGGGGTGGGGGGCTCAAANNAT
ATTNNNACCTAATTCTACTCTCTTNGGGTNTTNGTCTTTTTTTTTTTTTT
TTTTTTTTTTTTCTATTCCTTCTCTTATCTTACCCTACTTTCGTTTTTCC
GTTTGTNNGCTTACCNNTTGCCCCCAATCTTNNNNNNNCTACGTATATAC
ATAACCATCC
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTTAAAGGAAAGGTGTGTGTCTGT
ATGTGTTTGTGCGTGTGCAGGCTTGCCTGCCTGCCTTCTTGCATGTCTGT
TTTGTGTGCCTGAGTGTCTGAGAATGCGTGTACACGTGTACACGTGAGTT
TGTGTGTATATCTGTCTGAGATGTGTGAGTAGGGTTCAGAGGAGGGCGTC
AGATCTCTTGGAGCTGGAGCCACGTGTGTCTGGGATTCTGTTCTAGACCT
CATGGTTGAGTAGGAAGCGAACATAACCATTTCTCCAGCCCAAACAAGGT
TTTTGCTTTATGNCTAATTTCCAAACTGNGCCGCTGTCCCTTCTGGACTA
GTTTTCAGCTAAAGGCTGCCATCTTGAAAAAACTAAAAATACAGGGCTCA
GGACAAAAGATTCTGTTGAGACTATGACTGCCATTCCACAGAGAGAGGGG
TCTTCTCTTGGAATTATTAAATTACCATTGAGTCAATTCCCCTAACATTA
GCAATACTCGAGTTTAAATTAAGAGCAAGTATTTAGAATCTTGATATTGT
GAAGGCTTTCCTGTGAAGTTAATGATAAAGATTTATTTAAATTACACTCA
TTATGTCTTTCAAAATGTAATTGTCCAAATAATTATTCTGAGTTTGGTGT
AACACATACCCTTTACTCTCCCTAGTCCTCAAAGGTATCCTAGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_d23.b1 MSMg01no191_d23.b1 CHROMAT_FILE:
MSMg01no191_d23.b1 PHD_FILE: MSMg01no191_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:47 2005
         (314 letters)



>mm_chr18_57005128_57005841
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacattacgctgagactatgctgtttgtacagtatgtttgtgaaggagaacga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattccacattacgctgagactatgctgtttgtacagtatgtttgtgaaggagaacga 455

                                                                       
Query: 64  gggaaacttaaggtccccttggtcgtgaagattctgtctcctttccctatgcccactaca 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaaaacttaaggtccccttggtcgtgaagattctgtctcctttccctatgcccactaca 395

                                                                       
Query: 124 gagtcttgctggagaaaagtgaaacataggctgttgcaactatttgtctggtaaattctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gagtcttgctggagaaaagtgaaacataggctgttgcaactatttgtctggtaaattctg 335

                                                                       
Query: 184 tatgcctcttanaaagtaaagaacctagattacagtttgaccaagactcaanagcctaca 243
           ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 334 tatgcctcttagaaagtagagaacctagattacagtttgaccaagactcaaaagcctaca 275

                                                                       
Query: 244 gaagaaatactaaacaatggagaaaaatgtgcaaggaccttgaatgggaacagtaagggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaagaaatactaaacaatggagaaaaatgtgcaaggaccttgaatgggaacagtaagggg 215

                      
Query: 304 cagtgccttac 314
           |||||||||||
Sbjct: 214 cagtgccttac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)