BAC Information

Click to search

BAC

Clone NameMSMg01-191F07
Chromosome18 (Build37)
Map Location 21,723,651 - 21,871,509
singlet/doubletdoublet
Overlap geneKlhl14
Upstream geneDsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F07.T7 (MSMg01no191_f07.b1)MSMg01-191F07.TJ (MSMg01no191_f07.g1)
ACCAG381388AG381389
length833748
length of high quality
(start - end)
239 (107 - 345)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no191_f07.b1 PHD_FILE: MSMg01no191_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:53 2005CHROMAT_FILE: MSMg01no191_f07.g1 PHD_FILE: MSMg01no191_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,723,651 - 21,723,885)(21,871,224 - 21,871,509)
sequence
CCTTTTTATCTTCTTTTTTNNNCTACNTTTCTCAATCCAATATAATTTCT
TTTNNTTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTATATTTAATATAGAGGCTTTTATATTGCCGTG
TAGACTGCTCTGAGGGTGGCATACTAAGTTTTGAGATACATTACCATTGG
TAAGAACCATATAACTAGTGGCTACTTAGTCGTTTCCAAAATGTTATCAC
TATGAAGAAACACTGCATACATTTTTATCTTCATGTTAGGACTAATAATT
CATTTATTAGTTTCTTTTGCATTAACACAGTCAGCAACCTAACGGCCAAG
CCTAGGGTAGAACTTTGCCTCACATGACTTTCATGGACTCTGCTCAGTGT
TACTTCTCACGCATCTTCTTGTTTCTCCCCCCCCCCCTCACTTGTTTCAC
ACTAATGAAATAAACTCTTACCTTTCTTGCATAGACGTAACCTGGATCCA
CCTATTATATTCGTTATTATACCGGCTGACAAATTTTGCACTATGCCTTC
CCGTACTAATACCCTTTGAGATATTTAAAACTCATATCTTTTTCTTGATC
TGCTTATTTGTCCTGACTTAACATCTCTTCTGCTGCTCCATTTTACTCCT
GCTACGACATTGTATCTTCTATGTATCCTTAGTTTGTCCCGCCCTTGTAT
CTGCCTATTTCATTCGCCTTATCTTCTCACTAACGTGTCGTTTTTCCACC
CCCTTACTATGTCTCTCTCCTTCCTCTTTGCCCCGCTTGTTAATTGTTTT
CTCTTCTTTTTTACTTACTCACACCTTTCTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGCCCATACAGTTCACTAG
CAATCCCACTCCTAAAGGCAGGGCTCAAACTCAAGGACTACTATCTTATG
GTTGTCACTCTAATAGCCAACATGGCTACCAAGTGATTGACAGATAGGCA
GCATATGCAGTGTGGACTGATCCATCCTGGGCAAAGGGTTGAGTCACGTA
TCCCTTGAGACATAGTTTGATGGTATGAAGTGTGATCTCTCGTTTCAGAA
AAACATGCAATTCAGAGCATATGTTACTTTTGGAACTTTCTGCTTAATAC
TTTTTTGACTATTTCTTTTCTCCCTGCCCCCCACCTTATCGTTATGAAAA
ATGAAACTAGGGTTGGGGACAGACTAATCCAGTTCTAATAAGCTTAGTGA
ATGCACATACTGTGTGTCTTCTGTAATGCTTTAAAACGTATTACCTGTCT
TAAATCTGAGCAGCTTAATAAGCAGGTCCTACTTTCATTCATGCATTCAT
TCACAAATAGCAAAGACAAATTTTGGACTGGATATTGGTTGACAGCATGG
TCACTAAGAAAGTGACAGTGGCCCTGAAGTGAGGTCATGATGGGAACACC
TTTAGCTGTTCTTTTCCTTGGAACCTTACCTCCAGATAGAAAAATCTCTG
AACCAAGAGAAAACCAAGGAAAAAACTGTTTTCATTTCTTAGTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f07.b1 MSMg01no191_f07.b1 CHROMAT_FILE:
MSMg01no191_f07.b1 PHD_FILE: MSMg01no191_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:53 2005
         (239 letters)



>mm_chr18_21723447_21724085
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatatttaatatagaggcttttatattgccgtgtagactgctctgagggtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatatttaatatagaggcttttatattgccgtgtagactgctctgagggtggc 264

                                                                       
Query: 65  atactaagttttgagatacattaccattggtaagaaccatataactagtggctacttagt 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaactaagttttgagatacattaccattggtaagaaccatataactagtggctacttagt 324

                                                                       
Query: 125 cgtttccaaaatgttatcactatgaagaaacactgcatacatttttatcttcatgttagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtttccaaaatgttatcactatgaagaaacactgcatacatttttatcttcatgttagg 384

                                                                  
Query: 185 actaataattcatttattagtttcttttgcattaacacagtcagcaacctaacgg 239
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaataattcatttattagtttcttttgcattaacacagtcagcaacctaacgg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no191_f07.g1 MSMg01no191_f07.g1 CHROMAT_FILE:
MSMg01no191_f07.g1 PHD_FILE: MSMg01no191_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:54 2005
         (286 letters)



>mm_chr18_21871024_21871709
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttagcccatacagttcactagcaatcccactcctaaaggcagggctcaaactcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctttagcccatacagttcactagcaatcccactcctaaaggcagggctcaaactcaagg 427

                                                                       
Query: 61  actactatcttatggttgtcactctaatagccaacatggctaccaagtgattgacagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 actactatcttatggttgtcactctaatagccaacatggctaccaagtgattgacagata 367

                                                                       
Query: 121 ggcagcatatgcagtgtggactgatccatcctgggcaaagggttgagtcacgtatccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcagcatatgcagtgtggactgatccatcctgggcaaagggttgagtcacgtatccctt 307

                                                                       
Query: 181 gagacatagtttgatggtatgaagtgtgatctctcgtttcagaaaaacatgcaattcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagacatagtttgatggtatgaagtgtgatctctcgtttcagaaaaacatgcaattcaga 247

                                                         
Query: 241 gcatatgttacttttggaactttctgcttaatacttttttgactat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcatatgttacttttggaactttctgcttaatacttttttgactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)