BAC Information

Click to search

BAC

Clone NameMSMg01-191G21
Chromosome18 (Build37)
Map Location 38,312,814 - 38,313,095
singlet/doubletsinglet
Overlap genenone
Upstream genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191G21.T7 (MSMg01no191_g21.b1)MSMg01-191G21.TJ (MSMg01no191_g21.g1)
ACCAG381448AG381449
length813774
length of high quality
(start - end)		---282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_g21.b1 PHD_FILE: MSMg01no191_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:02 2005CHROMAT_FILE: MSMg01no191_g21.g1 PHD_FILE: MSMg01no191_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGAAAAAAAAGAGGGGGGGGGGGGGGGGGGGGGCGGGNGGGGACGAAAA
GGGGGCGGGAAAGAGTACTAATTCCGAGGNGCGNGGANNNNGNGNNNTTN
CAACACAAAGAAGGNGAGGGNNNGNGGNGNGNGGNNNGNGNNNNGGTTGT
AGGCCGAAAAAAAGGGAGAGAGAGAAGAGNANGGGGGAGNGAAGNGGAAA
GAANGGNANNNANNNNAGGGAGAAGGGGGGGGGGAAGGGGGGAGAGGGNA
GGAGAAGAGGGAGAGNGGGGNANAGGAGGGAAAGGAAGGATGAGAGGAGG
AAGAGGGGGGGGNGGAAAAGGAGGAGGAAAAGGAGGAGAAAAGGAGAAGG
AGTATGTTATTGTGAGGGGAAAGAGAAAAAAAAGGGGAGAAAGTTTTGTG
GTTTTCCCCCCCCCCCCCCCCCGGGGGAAAAGGGGAAAAGGGGGNNNGGG
GGNGGGGGGGAGAAAAAAAAAAAAAAAAAAGGGGNNNGGGNNNGGGGGGN
AAANNGGAAAAGGGGAGGAAAAGAGGGGAAAAGGGGGAAAAAAAAAAAAA
AGGGGGGGGAGGAGAAGGGGGGAAGGGGGGGGGAAGAGAGGGGGGNGAGA
AAAAAAAAGGAAGGGAGGAGGGGGAGGGANAGAGGGAGGAGGGAAGAGAG
GGGGGGAAGGGGAGGAGGAGAAANAAAGGAGAGGGGGGGAAGAAGGAGAG
AGAGGGGAGAGGAAGGGGNGAAGGGGGAAGAAAGGTGGGGTGAAAAAAGG
GGGGGGGAAAGGGGAGGAGGAAGAAAGAGAAGAGAGGGGAGGGGGGGGGA
AAGAAAAAGGGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCAGGAAGAGTCCACAGTTT
GAGCAGTTTTCACGGGACTGTGGATCAAACATAAGGCTTCATGAATAGCT
GCCAAACATTACCTCTTGGCTATGCTCCTAACCCTAATCTGTCTTGTAAT
TTTGGGGTAGTTTGGGGTTCTAAATCAACATCAACGCAGCAACAGTTACT
GCTGACCTTTCCTTCTCCGTGGCCTTTAGAATATCTACCCTGGGATGGAG
TTCCAGGGTGGAGTCGCTGGGTGTGTCTCTAGCCTCAAACAGAACTTTAT
GAACCAGTGTGTTTTTTCTGCACCCCCCACCCCTGGGAGTACAGGATAGG
AAAGAGAGGGGGGCAGTGCCACAAAAAAAAAAAAAAAACCTCTCGGTGGG
TGGCTTATATCATCTACATTGTACCCCCTACACCCCGCACATAAAATTTT
TTTCTTCCCCCATTTACCCCTTTTTTCCCCCCCCCTTTTTTTTTTCTTTT
ATCTCCGTTAAAATTCAACATTATTCAAAATTTTCGCATTTTTCCCCCCT
CTCCCCCTTTTTATCTTTCTTTTTTTCTACCACCTTACTTTTTTCTCACC
CCATTCCCCACATATTTTCTCTCCTAATTCACTATCTTCAAATTTGTACC
ACCCCCCCCCCCCGCTTTTAATCTCTCATTATACTCCTGTTTATACTATC
GTAATTTGTCATATGAATATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_g21.g1 MSMg01no191_g21.g1 CHROMAT_FILE:
MSMg01no191_g21.g1 PHD_FILE: MSMg01no191_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:02 2005
         (282 letters)



>mm_chr18_38312614_38313295
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattccaggaagagtccacagtttgagcagttttcacgggactgtggatcaaacataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattccaggaagagtccacagtttgagcagttttcacgggactgtggatcaaacataagg 260

                                                                       
Query: 61  cttcatgaatagctgccaaacattacctcttggctatgctcctaaccctaatctgtcttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cttcatgaatagctgccaaacattacctcttggctatgctcctaaccctaatttgtcttg 320

                                                                       
Query: 121 taattttggggtagtttggggttctaaatcaacatcaacgcagcaacagttactgctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattttggggtagtttggggttctaaatcaacatcaacgcagcaacagttactgctgac 380

                                                                       
Query: 181 ctttccttctccgtggcctttagaatatctaccctgggatggagttccagggtggagtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccttctccgtggcctttagaatatctaccctgggatggagttccagggtggagtcg 440

                                                     
Query: 241 ctgggtgtgtctctagcctcaaacagaactttatgaaccagt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggtgtgtctctagcctcaaacagaactttatgaaccagt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |